Project name: ECD_197_1st

Status: done

Started: 2024-06-13 15:19:38
Settings
Chain sequence(s) A: NFTLPPNFGKRPTDLELSVKLVEMLKNIMLRTGCTLEESKIKEVLNKPKYIDLALEAQFTTMPRTALELAKVFRLKNIEALAILVCGCSPTGNLSNLFSLKLKGDLNLSWVMTTCSTICANERMADLLEKYSRGIYDGDLKDKVPYKGIKISLELVTKPCTEGMEIKSKRPQLLRKLMKELEEKVEKLTKEVTELSKENVGKSIMFAMTPKILKTSSLMPKLGFEKGYKISKEACLNGRCRRTVSIETGCRNVQLCSTILNVAFPPEVIGPLFFFPLLYMEQQLKEGEEIVKKAKEEEKAKE
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:08:05)
[INFO]       Main:     Simulation completed successfully.                                          (00:08:07)
Show buried residues

Minimal score value
-5.7509
Maximal score value
2.4005
Average score
-1.128
Total score value
-340.6613

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 N A -0.7343
2 F A 0.8507
3 T A 0.4477
4 L A 0.0629
5 P A -0.4783
6 P A -1.0866
7 N A -2.2702
8 F A 0.0000
9 G A -1.6156
10 K A -2.3574
11 R A -1.5807
12 P A -0.8899
13 T A -0.7412
14 D A -0.7705
15 L A 0.6465
16 E A -0.5420
17 L A 0.0000
18 S A 0.7578
19 V A 1.2996
20 K A -0.4532
21 L A 0.0000
22 V A 0.0511
23 E A -0.7894
24 M A 0.0000
25 L A 0.0000
26 K A -1.3846
27 N A -1.1304
28 I A -0.6085
29 M A 0.0000
30 L A -0.7511
31 R A -1.0257
32 T A 0.0000
33 G A 0.0000
34 C A 0.0000
35 T A -0.3149
36 L A 0.0000
37 E A -1.8643
38 E A -2.2940
39 S A -2.0091
40 K A -2.2222
41 I A -1.9467
42 K A -3.0996
43 E A -3.2889
44 V A -1.9181
45 L A -1.2155
46 N A -2.3165
47 K A -2.2916
48 P A -1.5366
49 K A -1.7021
50 Y A -0.9528
51 I A -0.8716
52 D A -2.0461
53 L A 0.0000
54 A A 0.0000
55 L A -0.4331
56 E A -0.7920
57 A A 0.0000
58 Q A 0.0000
59 F A 0.0000
60 T A -0.6713
61 T A 0.0000
62 M A 0.0000
63 P A 0.0000
64 R A -2.2401
65 T A 0.0000
66 A A 0.0000
67 L A -1.3989
68 E A -2.4035
69 L A 0.0000
70 A A 0.0000
71 K A -1.9474
72 V A 0.1242
73 F A -1.1353
74 R A -2.3884
75 L A -1.7354
76 K A -2.3505
77 N A -1.6716
78 I A -0.1335
79 E A 0.0000
80 A A 0.0000
81 L A 0.0000
82 A A 0.0000
83 I A 0.0000
84 L A 0.0000
85 V A 0.0000
86 C A 0.0000
87 G A 0.0000
88 C A 0.0000
89 S A 0.0000
90 P A 0.0000
91 T A 0.0000
92 G A 0.0000
93 N A -0.2636
94 L A 0.2615
95 S A 0.0000
96 N A 0.4023
97 L A 1.0137
98 F A 0.0000
99 S A 0.0000
100 L A 0.6737
101 K A -1.0205
102 L A 0.0000
103 K A -2.1007
104 G A 0.0000
105 D A -1.5291
106 L A -0.2661
107 N A -1.0416
108 L A 0.0000
109 S A 0.0000
110 W A -0.2016
111 V A 0.0000
112 M A 0.0000
113 T A 0.0000
114 T A 0.0000
115 C A 0.0000
116 S A 0.0000
117 T A 0.5897
118 I A 1.4331
119 C A 0.1797
120 A A 0.0000
121 N A -0.9419
122 E A -2.4348
123 R A -2.4594
124 M A 0.0000
125 A A -1.9312
126 D A -2.4697
127 L A 0.0000
128 L A 0.0000
129 E A -2.6511
130 K A -2.0062
131 Y A -1.5915
132 S A 0.0000
133 R A -3.0033
134 G A -2.0515
135 I A -1.6515
136 Y A -1.9951
137 D A -2.7412
138 G A -2.6168
139 D A -3.6782
140 L A 0.0000
141 K A -3.4707
142 D A -3.3593
143 K A -2.4842
144 V A 0.0000
145 P A -1.3959
146 Y A -1.3350
147 K A -1.5704
148 G A -0.5547
149 I A 0.0000
150 K A -1.4557
151 I A 0.0670
152 S A 0.0000
153 L A 0.0000
154 E A -0.8934
155 L A -0.6376
156 V A 0.0000
157 T A -0.9247
158 K A -2.3528
159 P A 0.0000
160 C A -1.4195
161 T A -1.8512
162 E A -2.8435
163 G A 0.0000
164 M A -2.1254
165 E A -3.4175
166 I A -2.4295
167 K A -2.4923
168 S A -2.6869
169 K A -3.2894
170 R A -3.2020
171 P A -2.3775
172 Q A -2.2537
173 L A -1.3418
174 L A -2.0415
175 R A -3.1507
176 K A -3.3252
177 L A -2.3160
178 M A -2.8729
179 K A -4.5309
180 E A -4.5107
181 L A 0.0000
182 E A -4.3549
183 E A -4.9705
184 K A -4.1716
185 V A -3.7395
186 E A -4.4255
187 K A -4.4510
188 L A 0.0000
189 T A -3.0788
190 K A -3.8549
191 E A -3.7750
192 V A 0.0000
193 T A -2.7954
194 E A -3.7913
195 L A -2.9331
196 S A 0.0000
197 K A -3.4738
198 E A -3.3966
199 N A 0.0000
200 V A 0.0000
201 G A -2.2524
202 K A -1.6026
203 S A 0.1974
204 I A 0.6964
205 M A 1.5504
206 F A 2.4005
207 A A 0.0000
208 M A 1.1208
209 T A 0.3535
210 P A -0.6224
211 K A -1.2624
212 I A 0.0000
213 L A -0.4487
214 K A -1.6104
215 T A 0.0000
216 S A 0.0000
217 S A -0.9784
218 L A -0.2875
219 M A 0.0000
220 P A 0.0000
221 K A -1.2946
222 L A -0.5759
223 G A 0.0000
224 F A 0.0000
225 E A -2.2082
226 K A -1.7731
227 G A 0.0000
228 Y A -1.5839
229 K A -2.8075
230 I A -1.7755
231 S A 0.0000
232 K A -3.0501
233 E A -2.6223
234 A A -1.4382
235 C A -0.9848
236 L A 0.0000
237 N A -2.3830
238 G A -2.5321
239 R A -3.2704
240 C A 0.0000
241 R A -2.2684
242 R A -1.8013
243 T A 0.0000
244 V A 0.0000
245 S A 0.0000
246 I A 0.0000
247 E A 0.0000
248 T A 0.0000
249 G A 0.0000
250 C A 0.0000
251 R A 0.0000
252 N A 0.0000
253 V A 0.0000
254 Q A -0.1229
255 L A 0.0000
256 C A 0.0000
257 S A 0.0000
258 T A 0.0000
259 I A 0.0000
260 L A 0.0000
261 N A 0.4578
262 V A 1.2107
263 A A 0.0404
264 F A 0.0000
265 P A -0.1156
266 P A -0.7220
267 E A -1.1435
268 V A 0.9065
269 I A 0.0000
270 G A 0.0000
271 P A 0.0000
272 L A 0.7935
273 F A 0.0000
274 F A 0.0000
275 F A 0.0000
276 P A 0.0000
277 L A 0.2728
278 L A 0.0355
279 Y A 0.0000
280 M A -0.5156
281 E A -1.8646
282 Q A -1.6501
283 Q A 0.0000
284 L A -1.7049
285 K A -3.1665
286 E A -2.6592
287 G A 0.0000
288 E A -3.5796
289 E A -3.5577
290 I A -2.4659
291 V A -2.9410
292 K A -4.1648
293 K A -4.6992
294 A A -4.2602
295 K A -5.0561
296 E A -5.6252
297 E A -5.7509
298 E A -5.6873
299 K A -5.3770
300 A A -3.9843
301 K A -4.3271
302 E A -3.8112
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Laboratory of Theory of Biopolymers 2018