Project name: 94206f8721f86

Status: done

Started: 2026-05-21 15:36:44
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Chain sequence(s) A: KGHKGHG
C: KGHKGHG
B: KGHKGHG
E: KGHKGHG
D: KGHKGHG
G: KGHKGHG
F: KGHKGHG
I: KGHKGHG
H: KGHKGHG
K: KGHKGHG
J: KGHKGHG
M: KGHKGHG
L: KGHKGHG
O: KGHKGHG
N: KGHKGHG
Q: KGHKGHG
P: KGHKGHG
S: KGHKGHG
R: KGHKGHG
T: KGHKGHG
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:06:48)
[INFO]       Main:     Simulation completed successfully.                                          (00:06:51)
Show buried residues

Minimal score value
-3.5855
Maximal score value
0.0
Average score
-1.9275
Total score value
-269.8441

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -3.1432
2 G A -2.9408
3 H A 0.0000
4 K A -2.7651
5 G A 0.0000
6 H A -1.7071
7 G A -1.9699
1 K B -3.1065
2 G B -2.8164
3 H B 0.0000
4 K B -2.8833
5 G B 0.0000
6 H B -1.8052
7 G B -1.8469
1 K C -3.0801
2 G C -2.8883
3 H C 0.0000
4 K C -2.8912
5 G C 0.0000
6 H C -1.8942
7 G C -2.0098
1 K D -3.1341
2 G D -3.0373
3 H D 0.0000
4 K D -3.1122
5 G D 0.0000
6 H D -1.9964
7 G D -2.2367
1 K E -2.6663
2 G E -2.6444
3 H E -2.8407
4 K E -3.0963
5 G E -2.6961
6 H E -2.1742
7 G E -2.4488
1 K F -2.9280
2 G F -2.5894
3 H F -2.8896
4 K F -3.0170
5 G F -2.7541
6 H F -2.2697
7 G F -1.9904
1 K G -3.4459
2 G G -3.0324
3 H G 0.0000
4 K G -2.5564
5 G G 0.0000
6 H G -2.1044
7 G G -2.3188
1 K H -3.3344
2 G H -2.7619
3 H H 0.0000
4 K H -2.3590
5 G H 0.0000
6 H H -1.7564
7 G H -2.0566
1 K I -2.9306
2 G I -2.7596
3 H I 0.0000
4 K I -2.6032
5 G I 0.0000
6 H I -1.5396
7 G I 0.0000
1 K J -3.1211
2 G J -2.6412
3 H J 0.0000
4 K J -2.7195
5 G J 0.0000
6 H J -1.6501
7 G J -2.1841
1 K K -2.8690
2 G K -2.6443
3 H K 0.0000
4 K K -2.7269
5 G K 0.0000
6 H K -1.7678
7 G K -2.2593
1 K L -3.2997
2 G L -2.8973
3 H L 0.0000
4 K L -3.2446
5 G L -2.7356
6 H L -1.8665
7 G L -2.1080
1 K M -3.3925
2 G M -2.9644
3 H M 0.0000
4 K M -3.0210
5 G M 0.0000
6 H M -1.6465
7 G M -1.7654
1 K N -3.5486
2 G N -3.0286
3 H N 0.0000
4 K N -2.8095
5 G N 0.0000
6 H N -1.6770
7 G N 0.0000
1 K O -3.5855
2 G O -3.5550
3 H O 0.0000
4 K O -3.3199
5 G O 0.0000
6 H O -2.1249
7 G O 0.0000
1 K P -2.9831
2 G P -3.2534
3 H P -3.2138
4 K P -3.3230
5 G P -2.5140
6 H P -2.1917
7 G P -1.9338
1 K Q -2.7060
2 G Q -2.5923
3 H Q 0.0000
4 K Q -2.7393
5 G Q 0.0000
6 H Q -2.3452
7 G Q -2.6809
1 K R -2.8422
2 G R -2.6206
3 H R 0.0000
4 K R -2.3072
5 G R 0.0000
6 H R -1.9265
7 G R -2.3698
1 K S -2.5756
2 G S -2.4446
3 H S 0.0000
4 K S -2.6479
5 G S 0.0000
6 H S -1.6833
7 G S 0.0000
1 K T -2.9021
2 G T -2.7283
3 H T 0.0000
4 K T -2.9611
5 G T -2.4914
6 H T -1.8172
7 G T -2.0471
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Laboratory of Theory of Biopolymers 2018