| Chain sequence(s) |
A: KGHKGHG
C: KGHKGHG B: KGHKGHG E: KGHKGHG D: KGHKGHG G: KGHKGHG F: KGHKGHG I: KGHKGHG H: KGHKGHG K: KGHKGHG J: KGHKGHG M: KGHKGHG L: KGHKGHG O: KGHKGHG N: KGHKGHG Q: KGHKGHG P: KGHKGHG S: KGHKGHG R: KGHKGHG T: KGHKGHG input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:06:48)
[INFO] Main: Simulation completed successfully. (00:06:51)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | K | A | -3.1432 | |
| 2 | G | A | -2.9408 | |
| 3 | H | A | 0.0000 | |
| 4 | K | A | -2.7651 | |
| 5 | G | A | 0.0000 | |
| 6 | H | A | -1.7071 | |
| 7 | G | A | -1.9699 | |
| 1 | K | B | -3.1065 | |
| 2 | G | B | -2.8164 | |
| 3 | H | B | 0.0000 | |
| 4 | K | B | -2.8833 | |
| 5 | G | B | 0.0000 | |
| 6 | H | B | -1.8052 | |
| 7 | G | B | -1.8469 | |
| 1 | K | C | -3.0801 | |
| 2 | G | C | -2.8883 | |
| 3 | H | C | 0.0000 | |
| 4 | K | C | -2.8912 | |
| 5 | G | C | 0.0000 | |
| 6 | H | C | -1.8942 | |
| 7 | G | C | -2.0098 | |
| 1 | K | D | -3.1341 | |
| 2 | G | D | -3.0373 | |
| 3 | H | D | 0.0000 | |
| 4 | K | D | -3.1122 | |
| 5 | G | D | 0.0000 | |
| 6 | H | D | -1.9964 | |
| 7 | G | D | -2.2367 | |
| 1 | K | E | -2.6663 | |
| 2 | G | E | -2.6444 | |
| 3 | H | E | -2.8407 | |
| 4 | K | E | -3.0963 | |
| 5 | G | E | -2.6961 | |
| 6 | H | E | -2.1742 | |
| 7 | G | E | -2.4488 | |
| 1 | K | F | -2.9280 | |
| 2 | G | F | -2.5894 | |
| 3 | H | F | -2.8896 | |
| 4 | K | F | -3.0170 | |
| 5 | G | F | -2.7541 | |
| 6 | H | F | -2.2697 | |
| 7 | G | F | -1.9904 | |
| 1 | K | G | -3.4459 | |
| 2 | G | G | -3.0324 | |
| 3 | H | G | 0.0000 | |
| 4 | K | G | -2.5564 | |
| 5 | G | G | 0.0000 | |
| 6 | H | G | -2.1044 | |
| 7 | G | G | -2.3188 | |
| 1 | K | H | -3.3344 | |
| 2 | G | H | -2.7619 | |
| 3 | H | H | 0.0000 | |
| 4 | K | H | -2.3590 | |
| 5 | G | H | 0.0000 | |
| 6 | H | H | -1.7564 | |
| 7 | G | H | -2.0566 | |
| 1 | K | I | -2.9306 | |
| 2 | G | I | -2.7596 | |
| 3 | H | I | 0.0000 | |
| 4 | K | I | -2.6032 | |
| 5 | G | I | 0.0000 | |
| 6 | H | I | -1.5396 | |
| 7 | G | I | 0.0000 | |
| 1 | K | J | -3.1211 | |
| 2 | G | J | -2.6412 | |
| 3 | H | J | 0.0000 | |
| 4 | K | J | -2.7195 | |
| 5 | G | J | 0.0000 | |
| 6 | H | J | -1.6501 | |
| 7 | G | J | -2.1841 | |
| 1 | K | K | -2.8690 | |
| 2 | G | K | -2.6443 | |
| 3 | H | K | 0.0000 | |
| 4 | K | K | -2.7269 | |
| 5 | G | K | 0.0000 | |
| 6 | H | K | -1.7678 | |
| 7 | G | K | -2.2593 | |
| 1 | K | L | -3.2997 | |
| 2 | G | L | -2.8973 | |
| 3 | H | L | 0.0000 | |
| 4 | K | L | -3.2446 | |
| 5 | G | L | -2.7356 | |
| 6 | H | L | -1.8665 | |
| 7 | G | L | -2.1080 | |
| 1 | K | M | -3.3925 | |
| 2 | G | M | -2.9644 | |
| 3 | H | M | 0.0000 | |
| 4 | K | M | -3.0210 | |
| 5 | G | M | 0.0000 | |
| 6 | H | M | -1.6465 | |
| 7 | G | M | -1.7654 | |
| 1 | K | N | -3.5486 | |
| 2 | G | N | -3.0286 | |
| 3 | H | N | 0.0000 | |
| 4 | K | N | -2.8095 | |
| 5 | G | N | 0.0000 | |
| 6 | H | N | -1.6770 | |
| 7 | G | N | 0.0000 | |
| 1 | K | O | -3.5855 | |
| 2 | G | O | -3.5550 | |
| 3 | H | O | 0.0000 | |
| 4 | K | O | -3.3199 | |
| 5 | G | O | 0.0000 | |
| 6 | H | O | -2.1249 | |
| 7 | G | O | 0.0000 | |
| 1 | K | P | -2.9831 | |
| 2 | G | P | -3.2534 | |
| 3 | H | P | -3.2138 | |
| 4 | K | P | -3.3230 | |
| 5 | G | P | -2.5140 | |
| 6 | H | P | -2.1917 | |
| 7 | G | P | -1.9338 | |
| 1 | K | Q | -2.7060 | |
| 2 | G | Q | -2.5923 | |
| 3 | H | Q | 0.0000 | |
| 4 | K | Q | -2.7393 | |
| 5 | G | Q | 0.0000 | |
| 6 | H | Q | -2.3452 | |
| 7 | G | Q | -2.6809 | |
| 1 | K | R | -2.8422 | |
| 2 | G | R | -2.6206 | |
| 3 | H | R | 0.0000 | |
| 4 | K | R | -2.3072 | |
| 5 | G | R | 0.0000 | |
| 6 | H | R | -1.9265 | |
| 7 | G | R | -2.3698 | |
| 1 | K | S | -2.5756 | |
| 2 | G | S | -2.4446 | |
| 3 | H | S | 0.0000 | |
| 4 | K | S | -2.6479 | |
| 5 | G | S | 0.0000 | |
| 6 | H | S | -1.6833 | |
| 7 | G | S | 0.0000 | |
| 1 | K | T | -2.9021 | |
| 2 | G | T | -2.7283 | |
| 3 | H | T | 0.0000 | |
| 4 | K | T | -2.9611 | |
| 5 | G | T | -2.4914 | |
| 6 | H | T | -1.8172 | |
| 7 | G | T | -2.0471 |