Project name: query_structure

Status: done

Started: 2026-03-16 19:55:28
Settings
Chain sequence(s) A: ALRPLYIDFKRDLGWKWIHEPKGYNANFAGANDEGLEVSQDLEPLTILYYIGKTPKIEQLSNMIVKSK
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:38)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:39)
Show buried residues

Minimal score value
-3.7402
Maximal score value
1.7031
Average score
-1.0578
Total score value
-71.9331

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A -0.2517
2 L A -0.3414
3 R A -1.4073
4 P A -0.5113
5 L A 0.6870
6 Y A 0.7982
7 I A -0.4151
8 D A 0.0000
9 F A 0.0000
10 K A -3.7024
11 R A -3.7402
12 D A -2.6350
13 L A -1.3249
14 G A -1.7887
15 W A -1.5918
16 K A -2.1912
17 W A -0.0216
18 I A 0.0000
19 H A -1.7082
20 E A -1.9261
21 P A -1.8895
22 K A -3.0518
23 G A -1.6639
24 Y A -0.2888
25 N A -0.1525
26 A A 0.0000
27 N A -0.1584
28 F A 0.3541
29 A A -0.2593
30 G A -0.9466
31 A A -1.3121
32 N A -2.5880
33 D A -3.1963
34 E A -3.0650
35 G A -1.7951
36 L A -0.4609
37 E A -1.7414
38 V A -1.0843
39 S A -1.9443
40 Q A -2.5889
41 D A -3.0213
42 L A -1.9271
43 E A -1.8351
44 P A -1.4562
45 L A 0.0000
46 T A -0.7423
47 I A 0.0000
48 L A -0.3130
49 Y A 0.3453
50 Y A 1.4450
51 I A 1.7031
52 G A -0.0545
53 K A -1.2651
54 T A -0.3500
55 P A 0.1993
56 K A 0.3517
57 I A 0.7489
58 E A -0.9519
59 Q A -1.5965
60 L A -0.9836
61 S A -1.2847
62 N A -2.0316
63 M A -1.0554
64 I A -0.7884
65 V A -1.1931
66 K A -1.9830
67 S A -1.5428
68 K A -2.4461
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Laboratory of Theory of Biopolymers 2018