Project name: 29.F2E7

Status: done

Started: 2026-07-07 08:51:07
Settings
Chain sequence(s) H: QVQLKQSGPGLVQPSQSLSITCTVSGFSLSNYGVHWVRQSPGKGLEWLGVIWSGGSTDYNAAFISRLSIRKGNSKSQVFFKMNSLQTDDTATYYCARGISTDQGAWFAYWGQGTLVTVSA
L: SIVMTQAPKFLLVSAGDRVTITCKASQSVSNDVAWYQQKPGQSPKLLIYYASNRYTGVPDRFTGSGYGTDFTFTISTVQAEDLAVYFCQQDYSSPWTFGGGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:21)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:22)
Show buried residues

Minimal score value
-2.5441
Maximal score value
1.6875
Average score
-0.5123
Total score value
-116.2871

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.4200
2 V H -0.8051
3 Q H -1.5670
4 L H 0.0000
5 K H -2.2660
6 Q H 0.0000
7 S H -0.9662
8 G H -0.3760
9 P H -0.1695
11 G H 0.1061
12 L H 0.3569
13 V H 0.0000
14 Q H -1.6957
15 P H -1.5799
16 S H -1.5900
17 Q H -1.9646
18 S H -1.5944
19 L H 0.0000
20 S H -0.7598
21 I H 0.0000
22 T H -0.7962
23 C H 0.0000
24 T H -1.2015
25 V H 0.0000
26 S H -1.0335
27 G H -0.9526
28 F H -0.5779
29 S H -0.8311
30 L H 0.0000
35 S H -1.1479
36 N H -1.4325
37 Y H -0.3993
38 G H 0.0000
39 V H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.6154
45 S H -1.1533
46 P H -1.2879
47 G H -1.7569
48 K H -2.4529
49 G H -1.3593
50 L H 0.0000
51 E H -0.6507
52 W H 0.0000
53 L H 0.0000
54 G H 0.0000
55 V H 0.0000
56 I H 0.0000
57 W H -0.4038
58 S H -0.8718
59 G H -0.7992
63 G H -1.0679
64 S H -0.8379
65 T H -0.9408
66 D H -0.7198
67 Y H 0.2388
68 N H 0.2502
69 A H 0.5307
70 A H 0.5100
71 F H 0.0000
72 I H 1.6875
74 S H 0.5006
75 R H -0.2906
76 L H 0.0000
77 S H -0.8084
78 I H 0.0000
79 R H -2.2673
80 K H -1.7039
81 G H -1.5942
82 N H -1.9233
83 S H -1.4936
84 K H -2.1874
85 S H -1.4870
86 Q H -1.5877
87 V H 0.0000
88 F H -0.8781
89 F H 0.0000
90 K H -1.5024
91 M H 0.0000
92 N H -1.6515
93 S H -1.4862
94 L H 0.0000
95 Q H -2.3607
96 T H -1.7075
97 D H -2.5441
98 D H 0.0000
99 T H -0.6279
100 A H 0.0000
101 T H 0.3058
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 G H 0.0000
108 I H -0.1178
109 S H -0.6509
110 T H -1.2310
111 D H -2.2210
112A Q H -1.8933
112 G H 0.0000
113 A H -0.3786
114 W H 0.0000
115 F H 0.0000
116 A H 0.2213
117 Y H 0.2896
118 W H -0.5720
119 G H 0.0000
120 Q H -1.8564
121 G H 0.0000
122 T H -0.0479
123 L H 1.1287
124 V H 0.0000
125 T H -0.0825
126 V H 0.0000
127 S H -0.5190
128 A H -0.3183
1 S L 0.0490
2 I L 0.0000
3 V L 1.2174
4 M L 0.0000
5 T L -0.3019
6 Q L 0.0000
7 A L -0.5537
8 P L -0.4432
9 K L -1.0533
10 F L 0.9753
11 L L 1.0009
12 L L 0.9436
13 V L 0.0000
14 S L -1.1631
15 A L -1.3375
16 G L -1.5181
17 D L -1.7907
18 R L -2.3326
19 V L 0.0000
20 T L -0.5469
21 I L 0.0000
22 T L -0.7676
23 C L 0.0000
24 K L -1.4899
25 A L 0.0000
26 S L -0.6080
27 Q L -1.2904
28 S L -0.8930
29 V L 0.0000
36 S L -0.1062
37 N L -0.0922
38 D L -0.2839
39 V L 0.0000
40 A L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L -0.8508
45 K L -1.2531
46 P L -0.8875
47 G L -1.4335
48 Q L -2.0243
49 S L -1.3024
50 P L 0.0000
51 K L -0.9858
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.3619
56 Y L -0.4827
57 A L 0.0000
65 S L -0.5596
66 N L -1.0573
67 R L -1.6652
68 Y L -0.6835
69 T L -0.5559
70 G L -0.8672
71 V L 0.0000
72 P L -1.2451
74 D L -2.0948
75 R L 0.0000
76 F L 0.0000
77 T L -0.8434
78 G L 0.0000
79 S L -0.3199
80 G L -0.2758
83 Y L 0.4966
84 G L -0.3546
85 T L -1.0814
86 D L -1.3864
87 F L 0.0000
88 T L -0.4117
89 F L 0.0000
90 T L -0.4876
91 I L 0.0000
92 S L -1.3090
93 T L -1.4695
94 V L 0.0000
95 Q L -1.5946
96 A L -1.1891
97 E L -1.6902
98 D L 0.0000
99 L L 0.0540
100 A L 0.0000
101 V L 0.0810
102 Y L 0.0000
103 F L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 D L -0.0631
108 Y L 0.5887
109 S L 0.2831
114 S L -0.2064
115 P L -0.2029
116 W L 0.2982
117 T L 0.3266
118 F L 0.0000
119 G L 0.0000
120 G L -1.0426
121 G L 0.0000
122 T L 0.0000
123 K L -0.2602
124 L L 0.0000
125 E L 0.1858
126 I L -0.3670
127 K L -1.4405
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Laboratory of Theory of Biopolymers 2018