Project name: 947ea38ce4d4fac

Status: done

Started: 2024-12-18 08:15:28
Settings
Chain sequence(s) H: QVQLQQSGSELVRPGASVKLSCRASGYTFTTYWMHWVKQRPGQGLEWIGNIYPHSGNTNYDERFKSKATLTVDTSSSTAYMQLSSLTSEDSAVYYCTRDLRGFAYWGQGTTVTVSSPKTTPPSVYPLAPAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPR
L: DIELTQSPAIMSASPGEKVTMTCSASSSLRYMHWYQQKSGTSPKRWIYDTYNLASGVPVRFSGSGSGTSYSLTISSMEAEDAATYYCQQWSSNPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:06:52)
[INFO]       Main:     Simulation completed successfully.                                          (00:06:56)
Show buried residues

Minimal score value
-3.9826
Maximal score value
1.9182
Average score
-0.6077
Total score value
-258.2671

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.0011
2 V H -0.4209
3 Q H -1.0146
4 L H -0.5086
5 Q H -1.6234
6 Q H -1.5610
7 S H -1.1909
8 G H -1.1828
9 S H -1.1666
11 E H -1.7335
12 L H -0.6258
13 V H -0.2762
14 R H -1.6942
15 P H -1.0357
16 G H -0.8896
17 A H -0.6981
18 S H -0.4743
19 V H -0.6508
20 K H -1.6411
21 L H 0.0000
22 S H -1.1929
23 C H 0.0000
24 R H -2.0970
25 A H 0.0000
26 S H -0.5788
27 G H -0.0925
28 Y H 0.7352
29 T H 1.1123
30 F H 1.9182
35 T H 1.1677
36 T H 0.5422
37 Y H 0.8954
38 W H 0.3484
39 M H 0.0000
40 H H 0.0341
41 W H 0.0000
42 V H 0.0000
43 K H 0.0000
44 Q H 0.0000
45 R H -1.4843
46 P H -0.9999
47 G H -1.1093
48 Q H -1.1049
49 G H -0.8657
50 L H 0.0000
51 E H -0.9924
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 N H 0.0000
56 I H 0.0000
57 Y H -0.3890
58 P H -0.3973
59 H H -1.0095
62 S H -1.1283
63 G H -1.2219
64 N H -1.6503
65 T H -0.7574
66 N H -0.8095
67 Y H -1.0081
68 D H -2.3604
69 E H -3.4660
70 R H -3.4614
71 F H 0.0000
72 K H -3.4968
74 S H -2.5255
75 K H -2.5731
76 A H 0.0000
77 T H -0.8854
78 L H 0.0000
79 T H -0.2130
80 V H -0.3304
81 D H -0.6430
82 T H -0.2611
83 S H -0.5040
84 S H -0.7672
85 S H -0.5015
86 T H -0.8274
87 A H 0.0000
88 Y H -0.4968
89 M H 0.0000
90 Q H 0.0000
91 L H 0.0000
92 S H -1.2504
93 S H -0.8083
94 L H -0.7520
95 T H -0.5600
96 S H -0.9623
97 E H -1.9249
98 D H 0.0000
99 S H -0.7495
100 A H 0.0000
101 V H -0.3395
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 T H 0.0000
106 R H 0.0000
107 D H -0.0995
108 L H -0.2043
109 R H -1.5964
114 G H 0.0000
115 F H 0.0000
116 A H -0.2094
117 Y H 0.4881
118 W H -0.2120
119 G H -0.9344
120 Q H -1.3131
121 G H -0.9283
122 T H 0.0000
123 T H -0.6547
124 V H 0.0000
125 T H -0.6210
126 V H -0.3669
127 S H -0.6621
128 S H -0.8202
129 P H -1.2382
130 K H -1.7464
131 T H -0.8593
132 T H -0.5128
133 P H -0.7490
134 P H 0.0000
135 S H -0.5715
136 V H 0.0000
137 Y H -0.6149
138 P H -0.5429
139 L H 0.0000
140 A H -0.0406
141 P H -0.2270
142 A H -0.6478
143 A H 0.2581
144 A H 0.3505
145 S H 0.3101
146 M H 1.0089
147 V H 0.7271
148 T H 0.3278
149 L H 0.0000
150 G H 0.0000
151 C H 0.0000
152 L H 0.0000
153 V H 0.0000
154 K H -0.3801
155 G H -0.2532
156 Y H 0.0000
157 F H -0.2944
158 P H 0.0000
159 E H -1.0269
160 P H -0.5404
161 V H 0.3174
162 T H 0.2444
163 V H 0.6077
164 T H -0.1002
165 W H 0.0000
166 N H -0.8894
167 S H -0.5447
168 G H -0.7264
169 S H -0.4574
170 L H -0.0356
171 S H -0.2968
172 S H -0.2762
173 G H -0.1277
174 V H 0.1453
175 H H -0.5618
176 T H -0.3034
177 F H 0.0000
178 P H 0.0646
179 A H 0.7465
180 V H 1.4106
181 L H 1.2943
182 Q H -0.0062
183 S H -0.8053
184 D H -1.2125
185 L H -0.0557
186 Y H 0.4905
187 T H 0.0000
188 L H 0.0000
189 S H 0.0000
190 S H 0.0000
191 S H 0.0301
192 V H 0.0000
193 T H 0.2164
194 V H 0.0000
195 P H 0.2750
196 S H 0.0494
197 S H -0.4791
198 T H -0.6958
199 W H -0.2853
200 P H -0.5405
201 S H -1.0797
202 E H -1.8355
203 T H -1.1647
204 V H 0.0000
205 T H -1.4703
206 C H 0.0000
207 N H -1.4541
208 V H 0.0000
209 A H -0.8057
210 H H 0.0000
211 P H -0.5498
212 A H -0.5646
213 S H -0.6528
214 S H -0.7560
215 T H -1.0128
216 K H -2.1647
217 V H -1.7130
218 D H -2.9618
219 K H -2.3921
220 K H -2.1924
221 I H 0.0000
222 V H 0.4927
223 P H -0.1465
224 R H -1.3501
1 D L -1.0907
2 I L -0.0189
3 E L -1.4271
4 L L 0.0000
5 T L -0.6140
6 Q L -0.4038
7 S L -0.1439
8 P L 0.3049
9 A L 0.7843
10 I L 1.7958
11 M L 0.8429
12 S L -0.1087
13 A L 0.0000
14 S L -1.8036
15 P L -2.1316
16 G L -2.0698
17 E L -2.9746
18 K L -2.7187
19 V L 0.0000
20 T L -0.7903
21 M L 0.0000
22 T L -0.2829
23 C L 0.0000
24 S L -0.6195
25 A L 0.0000
26 S L -0.4507
27 S L -0.3977
28 S L -0.6440
29 L L -0.6441
37 R L -1.5493
38 Y L 0.0565
39 M L 0.0000
40 H L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L -1.1252
45 K L -1.6363
46 S L -1.3152
47 G L -1.0569
48 T L -1.0112
49 S L 0.0000
50 P L 0.0000
51 K L -1.2277
52 R L -0.4320
53 W L 0.0979
54 I L 0.0000
55 Y L 0.3697
56 D L 0.0000
57 T L 0.4616
65 Y L 1.2988
66 N L 0.5441
67 L L 1.6027
68 A L 0.4454
69 S L -0.1913
70 G L -0.2243
71 V L 0.4235
72 P L 0.8502
74 V L 1.7589
75 R L 0.3685
76 F L 0.0000
77 S L 0.4147
78 G L 0.2407
79 S L 0.0206
80 G L -0.3200
83 S L -0.7147
84 G L -0.6676
85 T L -0.3636
86 S L -0.4762
87 Y L 0.0000
88 S L -0.2956
89 L L 0.0000
90 T L -0.5493
91 I L 0.0000
92 S L -1.0014
93 S L -1.7543
94 M L 0.0000
95 E L -2.2872
96 A L -1.5690
97 E L -2.3072
98 D L 0.0000
99 A L -1.1079
100 A L 0.0000
101 T L -0.4141
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.1384
107 W L 0.9291
108 S L -0.0970
109 S L -0.6336
114 N L -1.5458
115 P L -0.5508
116 P L -0.4799
117 T L -0.4587
118 F L 0.0000
119 G L 0.0000
120 A L -0.5213
121 G L 0.0000
122 T L 0.0000
123 K L -0.0689
124 L L 0.0000
125 E L 0.0000
126 L L 0.0000
127 K L -1.6564
128 R L -2.5945
129 A L -1.4654
130 D L -1.8949
131 A L -0.9879
132 A L -0.5875
133 P L -0.4074
134 T L -0.0527
135 V L 0.0000
136 S L -0.1186
137 I L 0.0000
138 F L 0.0000
139 P L -0.4101
140 P L -0.3245
141 S L -0.9416
142 S L -1.1798
143 E L -1.9119
144 Q L 0.0000
145 L L -1.0472
146 T L -0.9717
147 S L -0.9976
148 G L -1.2356
149 G L -1.0546
150 A L 0.0000
151 S L 0.0000
152 V L 0.0000
153 V L 0.0000
154 C L 0.0000
155 F L 0.0000
156 L L 0.0000
157 N L -0.7943
158 N L -1.3807
159 F L 0.0000
160 Y L 0.0000
161 P L -1.5665
162 K L -1.3004
163 D L -2.3511
164 I L -1.6465
165 N L -1.8397
166 V L -1.0960
167 K L -1.6592
168 W L 0.0000
169 K L -2.2989
170 I L 0.0000
171 D L -3.0457
172 G L -2.1394
173 S L -2.0484
174 E L -3.2303
175 R L -2.5481
176 Q L -2.4528
177 N L -2.0334
178 G L -0.8371
179 V L -0.4256
180 L L -0.0348
181 N L -0.1965
182 S L 0.0000
183 W L -0.2170
184 T L 0.0000
185 D L -2.2784
186 Q L -2.2173
187 D L -2.8464
188 S L -2.2678
189 K L -3.0058
190 D L -3.3456
191 S L -2.7001
192 T L -2.3015
193 Y L 0.0000
194 S L 0.0000
195 M L 0.0000
196 S L 0.0000
197 S L 0.0000
198 T L 0.0000
199 L L 0.0000
200 T L -0.1187
201 L L -0.8532
202 T L -1.4917
203 K L -2.7165
204 D L -3.3468
205 E L -2.6585
206 Y L 0.0000
207 E L -3.9826
208 R L -3.8920
209 H L -3.0586
210 N L -2.9699
211 S L -1.9396
212 Y L 0.0000
213 T L -0.6110
214 C L 0.0000
215 E L -0.0723
216 A L 0.0000
217 T L -1.0884
218 H L -1.5431
219 K L -2.3042
220 T L -1.2184
221 S L -0.6548
222 T L -0.5426
223 S L -0.1345
224 P L 0.2420
225 I L 1.3142
226 V L 1.5051
227 K L -0.0697
228 S L -0.4507
229 F L -1.1071
230 N L -2.2863
231 R L -2.8493
232 N L -2.6784
233 E L -2.4216
234 C L -0.9204
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Laboratory of Theory of Biopolymers 2018