| Chain sequence(s) |
A: GGGHKGF
C: GGGHKGF B: GGGHKGF D: GGGHKGF input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:31)
[INFO] Main: Simulation completed successfully. (00:00:32)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.2152 | |
| 2 | G | A | -1.6655 | |
| 3 | G | A | -2.4102 | |
| 4 | H | A | -2.6201 | |
| 5 | K | A | -1.8079 | |
| 6 | G | A | -0.4138 | |
| 7 | F | A | 1.7007 | |
| 1 | G | B | -1.1584 | |
| 2 | G | B | -1.7811 | |
| 3 | G | B | -2.2724 | |
| 4 | H | B | -2.8853 | |
| 5 | K | B | -2.1927 | |
| 6 | G | B | -0.4889 | |
| 7 | F | B | 1.5816 | |
| 1 | G | C | -1.1541 | |
| 2 | G | C | -1.7808 | |
| 3 | G | C | -2.2559 | |
| 4 | H | C | -2.8865 | |
| 5 | K | C | -2.2331 | |
| 6 | G | C | -0.6997 | |
| 7 | F | C | 1.0941 | |
| 1 | G | D | -1.2186 | |
| 2 | G | D | -1.6659 | |
| 3 | G | D | -2.3934 | |
| 4 | H | D | -2.5906 | |
| 5 | K | D | -2.0292 | |
| 6 | G | D | -0.4841 | |
| 7 | F | D | 1.4386 |