| Chain sequence(s) |
A: GHKGHKS
C: GHKGHKS B: GHKGHKS D: GHKGHKS input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:00)
[INFO] Main: Simulation completed successfully. (00:02:01)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -3.2268 | |
| 2 | H | A | -3.7443 | |
| 3 | K | A | -3.3478 | |
| 4 | G | A | -2.9239 | |
| 5 | H | A | -2.8457 | |
| 6 | K | A | -2.6265 | |
| 7 | S | A | -1.6122 | |
| 1 | G | B | -2.3287 | |
| 2 | H | B | -3.3302 | |
| 3 | K | B | -3.6859 | |
| 4 | G | B | -3.2476 | |
| 5 | H | B | -3.4760 | |
| 6 | K | B | -2.9567 | |
| 7 | S | B | -1.6866 | |
| 1 | G | C | -2.7758 | |
| 2 | H | C | -4.0933 | |
| 3 | K | C | -5.0470 | |
| 4 | G | C | -4.4783 | |
| 5 | H | C | -4.7052 | |
| 6 | K | C | -4.1839 | |
| 7 | S | C | -1.9375 | |
| 1 | G | D | -3.2791 | |
| 2 | H | D | -3.9992 | |
| 3 | K | D | -5.1346 | |
| 4 | G | D | -4.2749 | |
| 5 | H | D | -4.5813 | |
| 6 | K | D | -4.2367 | |
| 7 | S | D | -2.7753 |