Project name: 8F6O VHVL

Status: done

Started: 2026-03-30 05:23:58
Settings
Chain sequence(s) H: QVQLVQSGAEVKKPGASVKVSCKASGFSLSSYGVSWVRQAPGQGLEWMGAISYDGITYYASWAKSRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARGDYYDDYVYVYALDIWGQGTLVTVSS
L: EIVLTQSPGTLSLSPGERATLSCQASQSISTALAWYQQKPGQAPRLLIYAASTLASGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQGYSSSNLDNVFGGGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:06)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:07)
Show buried residues

Minimal score value
-3.5355
Maximal score value
2.7686
Average score
-0.4306
Total score value
-100.3235

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.3091
2 V H -0.5677
3 Q H -0.7619
4 L H 0.0000
5 V H 0.4698
6 Q H 0.0000
7 S H -0.4564
8 G H -0.4305
9 A H 0.3321
11 E H 0.1668
12 V H 1.1107
13 K H -0.8295
14 K H -2.1209
15 P H -2.1147
16 G H -1.6202
17 A H -1.2051
18 S H -1.2695
19 V H 0.0000
20 K H -1.8345
21 V H 0.0000
22 S H -0.5303
23 C H 0.0000
24 K H -0.6916
25 A H 0.0000
26 S H -0.5609
27 G H -0.7968
28 F H -0.2257
29 S H -0.0684
30 L H 0.0000
35 S H -0.4396
36 S H -0.2539
37 Y H 0.1317
38 G H 0.3174
39 V H 0.0000
40 S H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.4843
45 A H -0.8749
46 P H -0.8879
47 G H -1.2481
48 Q H -1.7514
49 G H -1.1227
50 L H 0.0000
51 E H -0.8142
52 W H 0.0000
53 M H 0.0000
54 G H 0.0000
55 A H 0.5376
56 I H 0.0000
57 S H 0.3637
58 Y H -0.3212
59 D H -1.2147
63 G H -0.0413
64 I H 1.6351
65 T H 1.0918
66 Y H 0.8211
67 Y H -0.1672
68 A H 0.0000
69 S H -0.8271
70 W H -0.1886
71 A H 0.0000
72 K H -1.1842
74 S H -0.8569
75 R H -0.9004
76 V H 0.0000
77 T H -0.5698
78 M H 0.0000
79 T H -0.0950
80 R H -0.7113
81 D H -0.8469
82 T H -0.6667
83 S H -0.5000
84 T H -0.5550
85 S H -0.6669
86 T H 0.0000
87 V H 0.0000
88 Y H -0.5620
89 M H 0.0000
90 E H -1.1821
91 L H 0.0000
92 S H -1.0631
93 S H -1.2429
94 L H 0.0000
95 R H -3.1427
96 S H -2.3876
97 E H -2.5905
98 D H 0.0000
99 T H -0.6815
100 A H 0.0000
101 V H 0.7002
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 G H 0.4092
108 D H 0.4188
109 Y H 1.1609
110 Y H 0.3718
111 D H -1.2356
111A D H -1.1198
111B Y H 1.5240
112B V H 2.7686
112A Y H 2.6924
112 V H 2.3749
113 Y H 1.5788
114 A H 0.0000
115 L H 0.0000
116 D H -0.2630
117 I H -0.1243
118 W H -0.2360
119 G H 0.0000
120 Q H -1.0770
121 G H -0.3288
122 T H 0.0000
123 L H 1.0718
124 V H 0.0000
125 T H 0.0114
126 V H 0.0000
127 S H -1.1301
128 S H -1.2115
1 E L -2.0361
2 I L 0.0000
3 V L 0.8559
4 L L 0.0000
5 T L -0.4251
6 Q L 0.0000
7 S L -0.7611
8 P L -0.6885
9 G L -0.9555
10 T L -0.8010
11 L L -0.3051
12 S L -0.2425
13 L L -0.4226
14 S L -1.0125
15 P L -1.6315
16 G L -2.1156
17 E L -2.5289
18 R L -3.1450
19 A L 0.0000
20 T L -0.6372
21 L L 0.0000
22 S L -0.8201
23 C L 0.0000
24 Q L -1.7298
25 A L 0.0000
26 S L -0.9328
27 Q L -1.6779
28 S L -1.2081
29 I L 0.0000
36 S L -0.5581
37 T L -0.2737
38 A L 0.5318
39 L L 0.0000
40 A L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.4758
46 P L -1.1081
47 G L -1.3768
48 Q L -2.0198
49 A L -1.2244
50 P L 0.0000
51 R L -1.1198
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.4590
56 A L 0.2114
57 A L 0.0000
65 S L -0.1888
66 T L 0.1865
67 L L 0.2176
68 A L 0.0000
69 S L -0.2609
70 G L -0.6164
71 I L -0.5147
72 P L -0.9840
74 D L -2.0520
75 R L -1.9751
76 F L 0.0000
77 S L -0.5994
78 G L -0.2368
79 S L -0.7326
80 G L -1.1497
83 S L -1.1061
84 G L -1.2390
85 T L -1.7578
86 D L -2.4180
87 F L 0.0000
88 T L -0.7798
89 L L 0.0000
90 T L -0.8491
91 I L 0.0000
92 S L -2.3328
93 R L -3.5355
94 L L 0.0000
95 E L -2.7973
96 P L -1.6902
97 E L -2.3096
98 D L 0.0000
99 F L -0.4727
100 A L 0.0000
101 V L -0.4226
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 G L 0.9039
108 Y L 1.4284
109 S L 0.1992
110 S L -0.4759
112 S L -0.9091
113 N L -1.8030
114 L L -0.9659
115 D L -0.9212
116 N L -0.3090
117 V L 0.1583
118 F L 0.0000
119 G L 0.0000
120 G L -0.6602
121 G L -0.8731
122 T L 0.0000
123 K L -1.3826
124 V L 0.0000
125 E L -0.0112
126 I L 1.0215
127 K L -0.8297
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Laboratory of Theory of Biopolymers 2018