| Chain sequence(s) |
H: QVQLVQSGAEVKKPGASVKVSCKASGFSLSSYGVSWVRQAPGQGLEWMGAISYDGITYYASWAKSRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARGDYYDDYVYVYALDIWGQGTLVTVSS
L: EIVLTQSPGTLSLSPGERATLSCQASQSISTALAWYQQKPGQAPRLLIYAASTLASGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQGYSSSNLDNVFGGGTKVEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:06)
[INFO] Main: Simulation completed successfully. (00:01:07)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.3091 | |
| 2 | V | H | -0.5677 | |
| 3 | Q | H | -0.7619 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 0.4698 | |
| 6 | Q | H | 0.0000 | |
| 7 | S | H | -0.4564 | |
| 8 | G | H | -0.4305 | |
| 9 | A | H | 0.3321 | |
| 11 | E | H | 0.1668 | |
| 12 | V | H | 1.1107 | |
| 13 | K | H | -0.8295 | |
| 14 | K | H | -2.1209 | |
| 15 | P | H | -2.1147 | |
| 16 | G | H | -1.6202 | |
| 17 | A | H | -1.2051 | |
| 18 | S | H | -1.2695 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -1.8345 | |
| 21 | V | H | 0.0000 | |
| 22 | S | H | -0.5303 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -0.6916 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -0.5609 | |
| 27 | G | H | -0.7968 | |
| 28 | F | H | -0.2257 | |
| 29 | S | H | -0.0684 | |
| 30 | L | H | 0.0000 | |
| 35 | S | H | -0.4396 | |
| 36 | S | H | -0.2539 | |
| 37 | Y | H | 0.1317 | |
| 38 | G | H | 0.3174 | |
| 39 | V | H | 0.0000 | |
| 40 | S | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -0.4843 | |
| 45 | A | H | -0.8749 | |
| 46 | P | H | -0.8879 | |
| 47 | G | H | -1.2481 | |
| 48 | Q | H | -1.7514 | |
| 49 | G | H | -1.1227 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.8142 | |
| 52 | W | H | 0.0000 | |
| 53 | M | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | A | H | 0.5376 | |
| 56 | I | H | 0.0000 | |
| 57 | S | H | 0.3637 | |
| 58 | Y | H | -0.3212 | |
| 59 | D | H | -1.2147 | |
| 63 | G | H | -0.0413 | |
| 64 | I | H | 1.6351 | |
| 65 | T | H | 1.0918 | |
| 66 | Y | H | 0.8211 | |
| 67 | Y | H | -0.1672 | |
| 68 | A | H | 0.0000 | |
| 69 | S | H | -0.8271 | |
| 70 | W | H | -0.1886 | |
| 71 | A | H | 0.0000 | |
| 72 | K | H | -1.1842 | |
| 74 | S | H | -0.8569 | |
| 75 | R | H | -0.9004 | |
| 76 | V | H | 0.0000 | |
| 77 | T | H | -0.5698 | |
| 78 | M | H | 0.0000 | |
| 79 | T | H | -0.0950 | |
| 80 | R | H | -0.7113 | |
| 81 | D | H | -0.8469 | |
| 82 | T | H | -0.6667 | |
| 83 | S | H | -0.5000 | |
| 84 | T | H | -0.5550 | |
| 85 | S | H | -0.6669 | |
| 86 | T | H | 0.0000 | |
| 87 | V | H | 0.0000 | |
| 88 | Y | H | -0.5620 | |
| 89 | M | H | 0.0000 | |
| 90 | E | H | -1.1821 | |
| 91 | L | H | 0.0000 | |
| 92 | S | H | -1.0631 | |
| 93 | S | H | -1.2429 | |
| 94 | L | H | 0.0000 | |
| 95 | R | H | -3.1427 | |
| 96 | S | H | -2.3876 | |
| 97 | E | H | -2.5905 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.6815 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.7002 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | G | H | 0.4092 | |
| 108 | D | H | 0.4188 | |
| 109 | Y | H | 1.1609 | |
| 110 | Y | H | 0.3718 | |
| 111 | D | H | -1.2356 | |
| 111A | D | H | -1.1198 | |
| 111B | Y | H | 1.5240 | |
| 112B | V | H | 2.7686 | |
| 112A | Y | H | 2.6924 | |
| 112 | V | H | 2.3749 | |
| 113 | Y | H | 1.5788 | |
| 114 | A | H | 0.0000 | |
| 115 | L | H | 0.0000 | |
| 116 | D | H | -0.2630 | |
| 117 | I | H | -0.1243 | |
| 118 | W | H | -0.2360 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.0770 | |
| 121 | G | H | -0.3288 | |
| 122 | T | H | 0.0000 | |
| 123 | L | H | 1.0718 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | 0.0114 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -1.1301 | |
| 128 | S | H | -1.2115 | |
| 1 | E | L | -2.0361 | |
| 2 | I | L | 0.0000 | |
| 3 | V | L | 0.8559 | |
| 4 | L | L | 0.0000 | |
| 5 | T | L | -0.4251 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | -0.7611 | |
| 8 | P | L | -0.6885 | |
| 9 | G | L | -0.9555 | |
| 10 | T | L | -0.8010 | |
| 11 | L | L | -0.3051 | |
| 12 | S | L | -0.2425 | |
| 13 | L | L | -0.4226 | |
| 14 | S | L | -1.0125 | |
| 15 | P | L | -1.6315 | |
| 16 | G | L | -2.1156 | |
| 17 | E | L | -2.5289 | |
| 18 | R | L | -3.1450 | |
| 19 | A | L | 0.0000 | |
| 20 | T | L | -0.6372 | |
| 21 | L | L | 0.0000 | |
| 22 | S | L | -0.8201 | |
| 23 | C | L | 0.0000 | |
| 24 | Q | L | -1.7298 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -0.9328 | |
| 27 | Q | L | -1.6779 | |
| 28 | S | L | -1.2081 | |
| 29 | I | L | 0.0000 | |
| 36 | S | L | -0.5581 | |
| 37 | T | L | -0.2737 | |
| 38 | A | L | 0.5318 | |
| 39 | L | L | 0.0000 | |
| 40 | A | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | 0.0000 | |
| 45 | K | L | -1.4758 | |
| 46 | P | L | -1.1081 | |
| 47 | G | L | -1.3768 | |
| 48 | Q | L | -2.0198 | |
| 49 | A | L | -1.2244 | |
| 50 | P | L | 0.0000 | |
| 51 | R | L | -1.1198 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | 0.4590 | |
| 56 | A | L | 0.2114 | |
| 57 | A | L | 0.0000 | |
| 65 | S | L | -0.1888 | |
| 66 | T | L | 0.1865 | |
| 67 | L | L | 0.2176 | |
| 68 | A | L | 0.0000 | |
| 69 | S | L | -0.2609 | |
| 70 | G | L | -0.6164 | |
| 71 | I | L | -0.5147 | |
| 72 | P | L | -0.9840 | |
| 74 | D | L | -2.0520 | |
| 75 | R | L | -1.9751 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.5994 | |
| 78 | G | L | -0.2368 | |
| 79 | S | L | -0.7326 | |
| 80 | G | L | -1.1497 | |
| 83 | S | L | -1.1061 | |
| 84 | G | L | -1.2390 | |
| 85 | T | L | -1.7578 | |
| 86 | D | L | -2.4180 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.7798 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.8491 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -2.3328 | |
| 93 | R | L | -3.5355 | |
| 94 | L | L | 0.0000 | |
| 95 | E | L | -2.7973 | |
| 96 | P | L | -1.6902 | |
| 97 | E | L | -2.3096 | |
| 98 | D | L | 0.0000 | |
| 99 | F | L | -0.4727 | |
| 100 | A | L | 0.0000 | |
| 101 | V | L | -0.4226 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | G | L | 0.9039 | |
| 108 | Y | L | 1.4284 | |
| 109 | S | L | 0.1992 | |
| 110 | S | L | -0.4759 | |
| 112 | S | L | -0.9091 | |
| 113 | N | L | -1.8030 | |
| 114 | L | L | -0.9659 | |
| 115 | D | L | -0.9212 | |
| 116 | N | L | -0.3090 | |
| 117 | V | L | 0.1583 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | G | L | -0.6602 | |
| 121 | G | L | -0.8731 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.3826 | |
| 124 | V | L | 0.0000 | |
| 125 | E | L | -0.0112 | |
| 126 | I | L | 1.0215 | |
| 127 | K | L | -0.8297 |