Project name: dfhfdg

Status: done

Started: 2023-12-21 12:48:22
Settings
Chain sequence(s) A: MKLLKVAAIAAIVFSGSALAGVVPQYGGGGNHGGGGNNSGPNSELNIYQYGGGNSALALQTDARNSDLTITQHGGGNGADVGQGSDDSSIDLTQRGFGNSATLDQWNGKNSEMTVKQFGGGNGAAVDQTASNSSVNVTQVGFGNNATAHQY
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:38)
[CRITICAL]   pyMol:    Pymol encountered an error: /bin/sh: pymol: command not found Movie         
                       creation failed.                                                            (00:00:38)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:39)
Show buried residues

Minimal score value
-3.9331
Maximal score value
2.6446
Average score
-0.4337
Total score value
-65.4861

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.8457
2 K A -0.2540
3 L A 1.5404
4 L A 1.5563
5 K A -0.0184
6 V A 1.3794
7 A A 0.1763
8 A A 0.4143
9 I A 0.6110
10 A A 1.1903
11 A A 0.0000
12 I A 2.6446
13 V A 0.0000
14 F A 2.4296
15 S A 0.0000
16 G A -0.0558
17 S A 0.0547
18 A A 1.0415
19 L A 2.2273
20 A A 1.7706
21 G A 1.7054
22 V A 1.8039
23 V A 0.9270
24 P A 0.0919
25 Q A -0.7712
26 Y A 0.5135
27 G A -0.8240
28 G A -1.0222
29 G A -1.2912
30 G A -1.7733
31 N A -2.2420
32 H A -2.0801
33 G A -1.6595
34 G A -1.5101
35 G A -1.5560
36 G A -1.8898
37 N A -2.3965
38 N A -2.4006
39 S A -1.9091
40 G A -2.2763
41 P A -2.9643
42 N A -3.2600
43 S A 0.0000
44 E A -2.2275
45 L A 0.0000
46 N A -0.0284
47 I A 0.0000
48 Y A 1.1857
49 Q A 0.0000
50 Y A 0.3013
51 G A -0.5478
52 G A -0.5753
53 G A -0.4409
54 N A 0.0000
55 S A 0.6260
56 A A 0.0000
57 L A 1.3137
58 A A 0.0000
59 L A 0.9995
60 Q A 0.0000
61 T A -0.1467
62 D A -1.4782
63 A A 0.0000
64 R A -3.9331
65 N A -3.8504
66 S A 0.0000
67 D A -2.8221
68 L A 0.0000
69 T A -0.7443
70 I A 0.0000
71 T A -0.2328
72 Q A 0.0000
73 H A -0.8231
74 G A -0.7517
75 G A -0.5039
76 G A -0.5464
77 N A 0.0000
78 G A -0.2396
79 A A 0.0000
80 D A -1.0449
81 V A 0.0000
82 G A 0.0000
83 Q A 0.0000
84 G A -1.1750
85 S A 0.0000
86 D A -2.9318
87 D A -3.2963
88 S A 0.0000
89 S A -2.0853
90 I A 0.0000
91 D A -1.3665
92 L A 0.0000
93 T A 0.0000
94 Q A 0.0000
95 R A -1.4339
96 G A -0.2771
97 F A 1.0203
98 G A 0.0593
99 N A 0.0000
100 S A -0.6111
101 A A 0.0000
102 T A -0.8057
103 L A 0.0000
104 D A -0.9081
105 Q A 0.0000
106 W A -0.8770
107 N A -1.4462
108 G A 0.0000
109 K A -3.0437
110 N A -3.1355
111 S A 0.0000
112 E A -2.8332
113 M A 0.0000
114 T A -1.2603
115 V A 0.0000
116 K A -0.6965
117 Q A 0.0000
118 F A 0.6709
119 G A 0.8264
120 G A 0.0000
121 G A 0.0906
122 N A 0.0000
123 G A -0.7973
124 A A 0.0000
125 A A -0.7836
126 V A 0.0000
127 D A -1.0984
128 Q A 0.0000
129 T A -0.6865
130 A A -0.9287
131 S A -1.9396
132 N A -2.4988
133 S A -1.5547
134 S A -1.6593
135 V A 0.0000
136 N A -1.7201
137 V A 0.0000
138 T A -0.0977
139 Q A 0.0000
140 V A 1.8471
141 G A 1.4842
142 F A 1.8615
143 G A -0.0455
144 N A -0.4999
145 N A -1.4903
146 A A -0.7712
147 T A -0.6636
148 A A -0.9520
149 H A -1.2116
150 Q A -0.5806
151 Y A 0.5578
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Laboratory of Theory of Biopolymers 2018