| Chain sequence(s) |
D: CLLPLDYGPCRALLLRYYYDRYTQSCRQFLYGGCEGNANNFYTWEACDDAC
input PDB |
| Selected Chain(s) | D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with D chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:29)
[INFO] Main: Simulation completed successfully. (00:00:30)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 5 | C | D | 1.0016 | |
| 6 | L | D | 1.7377 | |
| 7 | L | D | 1.1690 | |
| 8 | P | D | 0.4232 | |
| 9 | L | D | 0.6705 | |
| 10 | D | D | -0.3765 | |
| 11 | Y | D | 0.6451 | |
| 12 | G | D | -0.7819 | |
| 13 | P | D | -0.8726 | |
| 14 | C | D | -0.6799 | |
| 15 | R | D | -1.1889 | |
| 16 | A | D | 0.4445 | |
| 17 | L | D | 2.1238 | |
| 18 | L | D | 2.0674 | |
| 19 | L | D | 1.6848 | |
| 20 | R | D | 0.9443 | |
| 21 | Y | D | -0.3179 | |
| 22 | Y | D | 0.0000 | |
| 23 | Y | D | -0.4531 | |
| 24 | D | D | 0.0000 | |
| 25 | R | D | -0.7670 | |
| 26 | Y | D | 0.3764 | |
| 27 | T | D | -0.6914 | |
| 28 | Q | D | -1.3609 | |
| 29 | S | D | -1.4525 | |
| 30 | C | D | 0.0000 | |
| 31 | R | D | -2.3593 | |
| 32 | Q | D | -1.3104 | |
| 33 | F | D | 0.0000 | |
| 34 | L | D | 1.6983 | |
| 35 | Y | D | 0.0000 | |
| 36 | G | D | 0.0000 | |
| 37 | G | D | -0.0860 | |
| 38 | C | D | -1.1192 | |
| 39 | E | D | -1.9481 | |
| 40 | G | D | -1.2003 | |
| 41 | N | D | -0.7480 | |
| 42 | A | D | -0.1185 | |
| 43 | N | D | 0.0000 | |
| 44 | N | D | 0.4020 | |
| 45 | F | D | 0.5234 | |
| 46 | Y | D | 1.3753 | |
| 47 | T | D | -0.0265 | |
| 48 | W | D | -1.0522 | |
| 49 | E | D | -2.2706 | |
| 50 | A | D | -1.3532 | |
| 51 | C | D | 0.0000 | |
| 52 | D | D | -2.9983 | |
| 53 | D | D | -2.8611 | |
| 54 | A | D | -1.2300 | |
| 55 | C | D | -0.7449 |