Project name: 951f8553f880933

Status: done

Started: 2025-11-16 21:18:52
Settings
Chain sequence(s) B: PVFRVVAYDEFGNEVASAEGTTREEAIEAARKVGAVAGTSPLPVTIKVYVDGELIAEAEGAGVGAPKAAEEAVEEAFEKL
input PDB
Selected Chain(s) B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with B chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:31)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:32)
Show buried residues

Minimal score value
-3.6635
Maximal score value
1.2473
Average score
-1.0549
Total score value
-84.3931

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 P B -0.5057
2 V B -0.8709
3 F B 0.0000
4 R B -1.7762
5 V B 0.0000
6 V B 0.0000
7 A B 0.0000
8 Y B -1.4737
9 D B -1.1529
10 E B -1.3636
11 F B 0.1274
12 G B -1.0728
13 N B -1.8905
14 E B -2.1492
15 V B -0.4136
16 A B -0.4251
17 S B -1.0818
18 A B -2.0099
19 E B -2.3075
20 G B 0.0000
21 T B -1.2657
22 T B -1.6512
23 R B -2.3415
24 E B -3.0888
25 E B -3.2017
26 A B 0.0000
27 I B -3.1949
28 E B -3.6635
29 A B 0.0000
30 A B 0.0000
31 R B -3.4693
32 K B -2.7384
33 V B 0.0000
34 G B 0.0000
35 A B -0.6274
36 V B 0.3986
37 A B 0.0000
38 G B 0.1546
39 T B 0.5120
40 S B 0.5449
41 P B 0.5122
42 L B 0.6984
43 P B -0.5051
44 V B 0.0000
45 T B -1.6275
46 I B 0.0000
47 K B -1.2531
48 V B 0.0000
49 Y B -1.3448
50 V B 0.0000
51 D B -2.2915
52 G B -1.9565
53 E B -2.0586
54 L B -0.7314
55 I B -0.9798
56 A B 0.0000
57 E B -2.6103
58 A B -2.5705
59 E B -2.4773
60 G B -0.9184
61 A B -0.0068
62 G B 0.8768
63 V B 1.2473
64 G B -0.2098
65 A B 0.0000
66 P B -1.8321
67 K B -2.5587
68 A B 0.0000
69 A B 0.0000
70 E B -2.9326
71 E B -3.3276
72 A B 0.0000
73 V B 0.0000
74 E B -3.1347
75 E B -3.5859
76 A B 0.0000
77 F B -1.8039
78 E B -2.8053
79 K B -2.2488
80 L B 0.0415
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018