Project name: RBTME1

Status: done

Started: 2025-02-24 17:35:03
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Chain sequence(s) A: MALMQKLMTVEEKKFLAESVFSVEEKKFLLDAVATLEEKKFLMDFVASLEEKKFLMEKLSTIEEKKFLVDTIYSIEEKKKLMEIIILLEEKKLLYDKMFRVEEKKMLYDLLVELEEKKSLFEKLVYVEEKKYLFEPVVFVEEKKYLLDVLTLLEEKKYLLEFVVTIEEKKYLMGFIASLEEKKYLYTQMVSVHHHHHH
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:06:42)
[INFO]       Main:     Simulation completed successfully.                                          (00:06:43)
Show buried residues

Minimal score value
-3.5221
Maximal score value
2.2813
Average score
-0.7139
Total score value
-141.3617

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.0000
2 A A 0.0000
3 L A -0.3193
4 M A 0.0000
5 Q A 0.0000
6 K A -0.7665
7 L A 0.0193
8 M A 0.0000
9 T A 0.0999
10 V A 0.6623
11 E A -1.1434
12 E A -0.5605
13 K A 0.0000
14 K A -1.4704
15 F A 0.3237
16 L A 0.0000
17 A A 0.0000
18 E A -1.1644
19 S A -0.2301
20 V A 1.0414
21 F A 0.0000
22 S A -0.2781
23 V A 0.0549
24 E A -1.7359
25 E A -1.3914
26 K A -1.7719
27 K A -2.2197
28 F A -1.2767
29 L A 0.0000
30 L A -1.3030
31 D A -1.5600
32 A A 0.0000
33 V A 0.0000
34 A A -0.1579
35 T A -0.3891
36 L A 0.6707
37 E A -0.7735
38 E A -0.2545
39 K A 0.0000
40 K A 0.0840
41 F A 1.4392
42 L A 0.8117
43 M A -0.0372
44 D A -0.4493
45 F A 0.0000
46 V A 1.1545
47 A A -0.5069
48 S A -1.0206
49 L A -1.3520
50 E A -2.6709
51 E A -2.4186
52 K A -1.9611
53 K A -1.8137
54 F A -0.9319
55 L A -1.1364
56 M A -1.1626
57 E A -2.3501
58 K A -2.1952
59 L A -1.1810
60 S A -1.2153
61 T A -0.5884
62 I A 0.8398
63 E A -1.0694
64 E A -0.8091
65 K A -0.9594
66 K A -0.7336
67 F A 0.8892
68 L A 0.2865
69 V A 0.0000
70 D A -0.2869
71 T A 0.1738
72 I A 0.0000
73 Y A 0.0000
74 S A -0.3475
75 I A -0.0031
76 E A -2.1203
77 E A -2.1508
78 K A -2.3190
79 K A -3.2019
80 K A -3.3432
81 L A 0.0000
82 M A -0.9663
83 E A -1.5254
84 I A 0.0151
85 I A 0.3735
86 I A 1.3932
87 L A 0.8087
88 L A 0.0000
89 E A -0.4623
90 E A -1.1677
91 K A -1.6643
92 K A -1.2770
93 L A -0.5913
94 L A -0.4744
95 Y A 0.0000
96 D A -1.9613
97 K A -1.4952
98 M A 0.4074
99 F A 0.3325
100 R A -1.9323
101 V A -1.3033
102 E A -2.6619
103 E A -2.3433
104 K A -2.4596
105 K A -2.7155
106 M A -1.2847
107 L A 0.0000
108 Y A -1.3527
109 D A -1.7159
110 L A 0.2022
111 L A 0.0000
112 V A 0.0000
113 E A -1.3893
114 L A -0.4486
115 E A 0.0000
116 E A -1.0524
117 K A -1.8500
118 K A -1.2902
119 S A 0.0000
120 L A 0.0041
121 F A 0.0302
122 E A -0.4538
123 K A -0.2922
124 L A 0.0000
125 V A 0.0000
126 Y A -0.6684
127 V A -1.4235
128 E A -1.9915
129 E A -3.0633
130 K A -3.2355
131 K A -2.4349
132 Y A -0.7740
133 L A 0.0000
134 F A 0.4279
135 E A -0.7728
136 P A 0.5418
137 V A 2.0467
138 V A 0.0000
139 F A 2.2813
140 V A 0.0000
141 E A -1.7655
142 E A -3.0180
143 K A -3.2757
144 K A -2.0216
145 Y A 0.0024
146 L A 0.2978
147 L A 0.6853
148 D A -1.0134
149 V A 0.0000
150 L A 0.0000
151 T A -1.3033
152 L A -1.5101
153 L A 0.0000
154 E A -3.2385
155 E A -3.5221
156 K A -3.3154
157 K A -2.9890
158 Y A -1.1342
159 L A 0.0000
160 L A 0.0000
161 E A 0.0307
162 F A 1.1172
163 V A 1.5488
164 V A 0.9006
165 T A -0.2331
166 I A 0.3432
167 E A -2.3780
168 E A -3.1281
169 K A -3.3327
170 K A -2.3329
171 Y A -0.5118
172 L A 0.7969
173 M A 1.7136
174 G A 0.0000
175 F A 0.0000
176 I A 0.4455
177 A A 0.0000
178 S A -0.4933
179 L A -0.7936
180 E A -1.8071
181 E A 0.0000
182 K A 0.0000
183 K A -1.3049
184 Y A 0.0000
185 L A 0.0000
186 Y A 0.4470
187 T A 0.3546
188 Q A 0.0000
189 M A 0.0000
190 V A -0.0005
191 S A -0.2035
192 V A -0.4616
193 H A -1.3192
194 H A -2.1253
195 H A -2.4288
196 H A -2.6986
197 H A -2.3389
198 H A -1.8656
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Laboratory of Theory of Biopolymers 2018