Project name: query_structure

Status: done

Started: 2026-03-16 20:29:53
Settings
Chain sequence(s) A: LPAPKNLVVSEVTEDSLRLSVVTYDRDGYDSFLIQYQESEKVGEAINLTVPGSERSYDLTGLKPGTEYTVSIYGVHNVYKDTNMRGLPLSAEFTT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:59)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:00)
Show buried residues

Minimal score value
-3.6212
Maximal score value
1.2982
Average score
-1.0558
Total score value
-100.2998

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 L A 0.4005
2 P A 0.1661
3 A A 0.1154
4 P A 0.0000
5 K A -1.7848
6 N A -1.1266
7 L A 0.0000
8 V A 0.7930
9 V A -0.2465
10 S A -0.8390
11 E A -1.8931
12 V A -1.0732
13 T A -1.8182
14 E A -2.9030
15 D A -2.8872
16 S A -2.2422
17 L A 0.0000
18 R A -1.7880
19 L A 0.0000
20 S A -0.4470
21 V A 0.0000
22 V A -0.5277
23 T A -1.3550
24 Y A -0.7214
25 D A -2.7964
26 R A -3.4634
27 D A -3.6212
28 G A -2.3282
29 Y A 0.0000
30 D A -2.4739
31 S A -1.7721
32 F A 0.0000
33 L A -0.2100
34 I A 0.0000
35 Q A -0.4420
36 Y A -0.5159
37 Q A -1.3916
38 E A -2.0530
39 S A -2.0250
40 E A -2.5040
41 K A -1.8781
42 V A -0.0332
43 G A -0.8854
44 E A -2.0011
45 A A -0.8018
46 I A -0.1793
47 N A -0.8071
48 L A 0.1282
49 T A -0.0134
50 V A -0.4468
51 P A -0.9742
52 G A 0.0000
53 S A -2.0840
54 E A -2.1746
55 R A -1.3084
56 S A -1.1160
57 Y A 0.0000
58 D A -2.3049
59 L A 0.0000
60 T A -1.5856
61 G A -1.5324
62 L A 0.0000
63 K A -3.0279
64 P A -2.5480
65 G A -1.8742
66 T A -2.2386
67 E A -2.7235
68 Y A 0.0000
69 T A -1.4550
70 V A 0.0000
71 S A -0.2526
72 I A 0.0000
73 Y A 0.2127
74 G A 0.0000
75 V A 0.0000
76 H A -1.6406
77 N A -2.3198
78 V A -0.4480
79 Y A -0.2182
80 K A -2.2033
81 D A -2.5103
82 T A -1.7347
83 N A -2.4183
84 M A -1.0340
85 R A -1.3074
86 G A 0.1322
87 L A 1.2982
88 P A 0.6220
89 L A 0.0757
90 S A -0.3111
91 A A -0.7851
92 E A -2.1555
93 F A 0.0000
94 T A -1.6696
95 T A -1.9922
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Laboratory of Theory of Biopolymers 2018