Project name: REST_test

Status: done

Started: 2025-06-01 18:19:01
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Chain sequence(s) A: MGSTWGSPGWVRLALCLTGLVLSLYALHVKAARARDRDYRALCDVGTAISCSRVFSSRWGRGFGLVEHVLGQDSILNQSNSIFGCIFYTLQLLLGCLRTRWASVLMLLSSLVSLAGSVYLAWILFFVLYDFCIVCITTYAINVSLMWLSFRKVQEPQGKAKRH
input PDB
Selected Chain(s) A
Distance of aggregation 5 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues FN83A
Energy difference between WT (input) and mutated protein (by FoldX) 1.57403 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:02:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:02:16)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:20)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:21)
Show buried residues

Minimal score value
-2.5111
Maximal score value
2.295
Average score
0.0645
Total score value
10.5195

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.9691
2 G A -0.3146
3 S A -0.3099
4 T A 0.1068
5 W A 1.1369
6 G A -0.1587
7 S A -0.2832
8 P A -0.1024
9 G A 0.0378
10 W A 1.4390
11 V A 1.7856
12 R A 0.0000
13 L A 0.4950
14 A A 0.1453
15 L A 0.2259
16 C A 0.0000
17 L A 0.7711
18 T A 0.0938
19 G A 0.0000
20 L A 0.7124
21 V A 1.8716
22 L A 0.5739
23 S A 0.0000
24 L A 0.7902
25 Y A 0.2990
26 A A 0.0000
27 L A 0.3161
28 H A -0.8763
29 V A 0.0000
30 K A -0.2614
31 A A -0.0271
32 A A -0.0740
33 R A -0.6828
34 A A -0.3642
35 R A -2.1597
36 D A -2.5111
37 R A -2.4896
38 D A -2.0695
39 Y A -0.3710
40 R A -1.7926
41 A A 0.0000
42 L A 1.5477
43 C A 0.0000
44 D A 0.0000
45 V A 1.7299
46 G A 0.1089
47 T A -0.1036
48 A A 0.1137
49 I A 0.5474
50 S A 0.0429
51 C A 0.0000
52 S A 0.0000
53 R A -1.0297
54 V A 0.0211
55 F A 0.1910
56 S A -0.1814
57 S A -0.3970
58 R A -1.7962
59 W A 0.0017
60 G A -0.2949
61 R A -1.8558
62 G A 0.0000
63 F A 0.4590
64 G A 0.0000
65 L A 1.3622
66 V A 0.3738
67 E A -0.5319
68 H A -0.7131
69 V A 1.8612
70 L A 1.7664
71 G A -0.1495
72 Q A -1.5758
73 D A -2.0117
74 S A 0.0041
75 I A 2.1882
76 L A 1.3803
77 N A 0.0000
78 Q A -0.3283
79 S A -0.3941
80 N A -0.1960
81 S A 0.0422
82 I A 0.4577
83 N A -0.5546 mutated: FN83A
84 G A -0.1569
85 C A 0.4436
86 I A 2.0632
87 F A 0.5526
88 Y A 0.0000
89 T A 0.0390
90 L A 0.5407
91 Q A 0.0000
92 L A 0.5274
93 L A 1.5936
94 L A 0.0000
95 G A 0.0019
96 C A 0.2179
97 L A 0.0387
98 R A -1.8121
99 T A -0.6768
100 R A -1.6299
101 W A 0.8494
102 A A 0.0000
103 S A 0.0000
104 V A 0.4531
105 L A 0.6709
106 M A 0.0000
107 L A 0.3901
108 L A 1.3185
109 S A 0.1999
110 S A 0.0000
111 L A 1.0523
112 V A 1.9004
113 S A 0.3387
114 L A 0.2635
115 A A 0.0894
116 G A -0.0752
117 S A 0.0000
118 V A 1.8321
119 Y A 0.6887
120 L A 0.2835
121 A A 0.2627
122 W A 1.1885
123 I A 0.0000
124 L A 0.0000
125 F A 1.8047
126 F A 2.2950
127 V A 1.0281
128 L A 0.5416
129 Y A 1.4843
130 D A 0.0000
131 F A 1.8252
132 C A 0.0000
133 I A 0.7479
134 V A 0.0000
135 C A 0.0000
136 I A 0.5822
137 T A 0.0683
138 T A 0.0104
139 Y A 0.1600
140 A A 0.0857
141 I A 0.0000
142 N A 0.0000
143 V A 0.9734
144 S A 0.0915
145 L A 0.0000
146 M A 0.0000
147 W A 1.2289
148 L A 0.4465
149 S A 0.0000
150 F A 0.7638
151 R A -1.7172
152 K A -0.5774
153 V A 0.5032
154 Q A -1.3423
155 E A -1.8491
156 P A -0.7505
157 Q A -1.3259
158 G A -0.9755
159 K A -1.7710
160 A A -0.5507
161 K A -2.0299
162 R A -2.3465
163 H A -1.3418
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Laboratory of Theory of Biopolymers 2018