| Chain sequence(s) |
H: VKLLEQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSS
L: ELVMTQSPSSLSASVGDRVNIACRASQGISSALAWYQQKPGKAPRLLIYDASNLESGVPSRFSGSGSGTDFTLTISSLQPEDFAIYYCQQFNSYPLTFGGGTKVEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:16)
[INFO] Main: Simulation completed successfully. (00:02:17)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | V | H | 1.6677 | |
| 2 | K | H | 0.7864 | |
| 3 | L | H | 1.1184 | |
| 4 | L | H | 0.0000 | |
| 5 | E | H | -0.8507 | |
| 6 | Q | H | 0.0000 | |
| 7 | S | H | -0.8412 | |
| 8 | G | H | -0.6295 | |
| 9 | A | H | 0.3303 | |
| 11 | E | H | 0.0889 | |
| 12 | V | H | 1.0163 | |
| 13 | K | H | -0.8239 | |
| 14 | K | H | -1.9795 | |
| 15 | P | H | -1.8467 | |
| 16 | G | H | -1.2843 | |
| 17 | A | H | -1.0872 | |
| 18 | S | H | -1.1542 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -1.8158 | |
| 21 | V | H | 0.0000 | |
| 22 | S | H | -0.7855 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -0.8977 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | 0.0686 | |
| 27 | G | H | 0.2802 | |
| 28 | Y | H | 0.2301 | |
| 29 | S | H | -0.3181 | |
| 30 | F | H | 0.0000 | |
| 35 | T | H | -0.3844 | |
| 36 | S | H | -0.0373 | |
| 37 | Y | H | 0.2973 | |
| 38 | G | H | 0.0000 | |
| 39 | L | H | 0.0000 | |
| 40 | H | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -0.6442 | |
| 45 | A | H | -1.0240 | |
| 46 | P | H | -1.1396 | |
| 47 | G | H | -1.3813 | |
| 48 | Q | H | -2.0950 | |
| 49 | R | H | -1.8716 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.9475 | |
| 52 | W | H | 0.0000 | |
| 53 | M | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | W | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | S | H | -0.8152 | |
| 58 | A | H | 0.0000 | |
| 59 | G | H | -0.5819 | |
| 62 | T | H | -0.7277 | |
| 63 | G | H | -1.1236 | |
| 64 | N | H | -1.5780 | |
| 65 | T | H | -0.9480 | |
| 66 | K | H | -1.1091 | |
| 67 | Y | H | -0.9718 | |
| 68 | S | H | 0.0000 | |
| 69 | Q | H | -2.8802 | |
| 70 | K | H | -2.8662 | |
| 71 | F | H | 0.0000 | |
| 72 | R | H | -3.0780 | |
| 74 | G | H | -1.8927 | |
| 75 | R | H | -1.4145 | |
| 76 | V | H | 0.0000 | |
| 77 | T | H | -0.7222 | |
| 78 | F | H | 0.0000 | |
| 79 | T | H | -0.5265 | |
| 80 | R | H | -0.9020 | |
| 81 | D | H | -1.0483 | |
| 82 | T | H | -0.6679 | |
| 83 | S | H | -0.4933 | |
| 84 | A | H | -0.5202 | |
| 85 | T | H | -0.6057 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.5510 | |
| 89 | M | H | 0.0000 | |
| 90 | G | H | -0.8890 | |
| 91 | L | H | 0.0000 | |
| 92 | S | H | -0.8632 | |
| 93 | S | H | -0.9282 | |
| 94 | L | H | 0.0000 | |
| 95 | R | H | -1.9359 | |
| 96 | P | H | -1.8316 | |
| 97 | E | H | -2.1775 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.4811 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.7132 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | D | H | 0.0000 | |
| 108 | P | H | 0.4672 | |
| 109 | Y | H | 0.9203 | |
| 110 | G | H | 0.0822 | |
| 111 | G | H | -0.3864 | |
| 112A | G | H | 0.0000 | |
| 112 | K | H | -1.1716 | |
| 113 | S | H | 0.0000 | |
| 114 | E | H | 0.0000 | |
| 115 | F | H | 0.0000 | |
| 116 | D | H | 0.0000 | |
| 117 | Y | H | 0.3293 | |
| 118 | W | H | 0.0000 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.4760 | |
| 121 | G | H | -0.7558 | |
| 122 | T | H | 0.0000 | |
| 123 | L | H | 1.1430 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | 0.0845 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.7409 | |
| 128 | S | H | -0.8566 | |
| 1 | E | L | -1.7017 | |
| 2 | L | L | 0.0000 | |
| 3 | V | L | 0.2306 | |
| 4 | M | L | 0.0000 | |
| 5 | T | L | -0.6873 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | -0.8199 | |
| 8 | P | L | -0.6379 | |
| 9 | S | L | -0.5565 | |
| 10 | S | L | -0.6469 | |
| 11 | L | L | -0.7034 | |
| 12 | S | L | -0.8650 | |
| 13 | A | L | -0.8528 | |
| 14 | S | L | -0.5143 | |
| 15 | V | L | 0.4350 | |
| 16 | G | L | -0.5563 | |
| 17 | D | L | -1.6114 | |
| 18 | R | L | -2.4620 | |
| 19 | V | L | 0.0000 | |
| 20 | N | L | -1.8312 | |
| 21 | I | L | 0.0000 | |
| 22 | A | L | -1.0737 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.4235 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -1.2059 | |
| 27 | Q | L | -1.9741 | |
| 28 | G | L | -1.6739 | |
| 29 | I | L | 0.0000 | |
| 36 | S | L | -0.9808 | |
| 37 | S | L | -0.8127 | |
| 38 | A | L | -0.7699 | |
| 39 | L | L | 0.0000 | |
| 40 | A | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | -0.4165 | |
| 44 | Q | L | 0.0000 | |
| 45 | K | L | -1.3008 | |
| 46 | P | L | -1.0429 | |
| 47 | G | L | -1.6159 | |
| 48 | K | L | -2.5179 | |
| 49 | A | L | -1.4346 | |
| 50 | P | L | 0.0000 | |
| 51 | R | L | -0.8040 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | -0.1738 | |
| 56 | D | L | -0.9061 | |
| 57 | A | L | 0.0000 | |
| 65 | S | L | -0.7284 | |
| 66 | N | L | -0.6793 | |
| 67 | L | L | 0.0264 | |
| 68 | E | L | 0.0000 | |
| 69 | S | L | -0.3771 | |
| 70 | G | L | -0.5303 | |
| 71 | V | L | 0.0000 | |
| 72 | P | L | -0.3799 | |
| 74 | S | L | -0.3799 | |
| 75 | R | L | -0.7546 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.5366 | |
| 78 | G | L | -0.5929 | |
| 79 | S | L | -0.8132 | |
| 80 | G | L | -1.1318 | |
| 83 | S | L | -1.2019 | |
| 84 | G | L | -1.3588 | |
| 85 | T | L | -1.8500 | |
| 86 | D | L | -2.1804 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -1.0133 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -1.0993 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.4672 | |
| 93 | S | L | -1.0622 | |
| 94 | L | L | 0.0000 | |
| 95 | Q | L | -0.7049 | |
| 96 | P | L | -0.9272 | |
| 97 | E | L | -1.6046 | |
| 98 | D | L | 0.0000 | |
| 99 | F | L | -0.0422 | |
| 100 | A | L | 0.0000 | |
| 101 | I | L | -0.0064 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | F | L | 0.0000 | |
| 108 | N | L | -0.9816 | |
| 109 | S | L | -0.7613 | |
| 114 | Y | L | -0.3748 | |
| 115 | P | L | -0.8663 | |
| 116 | L | L | 0.0000 | |
| 117 | T | L | -0.2139 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | G | L | -0.8093 | |
| 121 | G | L | -0.7563 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -0.6670 | |
| 124 | V | L | 0.0000 | |
| 125 | E | L | -0.8475 | |
| 126 | I | L | -0.4411 | |
| 127 | K | L | -1.3508 |