Project name: RFC25

Status: done

Started: 2025-07-15 15:44:49
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Chain sequence(s) A: TVTSTADVESDGKKSTITQTFPTPKPGETINVNVTVKGTNKVSLNLTTTVTTPGGFTGNLIVEPEVNGGGGANIDVDLSVTTGADAGGVTTITVNIDVDSKEKKEIDLTVNVTIQAAYTN
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:02)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:03)
Show buried residues

Minimal score value
-4.2409
Maximal score value
0.602
Average score
-1.1539
Total score value
-138.4648

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 T A -0.0736
2 V A 0.0000
3 T A -0.2832
4 S A 0.0000
5 T A -0.2755
6 A A 0.0000
7 D A -1.3065
8 V A 0.0000
9 E A -3.3508
10 S A -2.6816
11 D A -2.6579
12 G A -2.4278
13 K A -3.3828
14 K A -3.3721
15 S A -1.6706
16 T A -0.5670
17 I A 0.3650
18 T A -0.2101
19 Q A -0.7650
20 T A -0.3924
21 F A -0.1311
22 P A -0.3527
23 T A -0.7121
24 P A -1.5007
25 K A -2.3716
26 P A -1.6201
27 G A -1.6849
28 E A -2.6107
29 T A -1.8342
30 I A 0.0000
31 N A -1.8463
32 V A 0.0000
33 N A -2.0868
34 V A 0.0000
35 T A -1.0874
36 V A 0.0000
37 K A -2.7143
38 G A -2.7884
39 T A -3.1223
40 N A -3.2152
41 K A -3.4016
42 V A 0.0000
43 S A -2.2480
44 L A 0.0000
45 N A -1.2535
46 L A 0.0000
47 T A -0.2687
48 T A 0.0000
49 T A -0.0026
50 V A 0.0000
51 T A -0.3022
52 T A -0.2521
53 P A -0.5234
54 G A -0.6492
55 G A -0.5982
56 F A 0.0661
57 T A -0.0386
58 G A -0.7101
59 N A -1.0033
60 L A -0.1763
61 I A -0.1953
62 V A -0.5306
63 E A -2.0697
64 P A -1.7322
65 E A -2.2310
66 V A -1.1735
67 N A -2.1014
68 G A -1.9750
69 G A -2.1121
70 G A -1.4044
71 G A -1.2549
72 A A -2.7029
73 N A -2.8429
74 I A -2.4499
75 D A -2.4316
76 V A -0.8782
77 D A -1.9319
78 L A -0.3776
79 S A -0.2084
80 V A 0.6020
81 T A 0.2004
82 T A 0.1603
83 G A -0.4915
84 A A -0.8590
85 D A -1.8487
86 A A -1.0144
87 G A -1.0758
88 G A -0.8187
89 V A -0.4947
90 T A 0.0000
91 T A -0.3009
92 I A 0.0000
93 T A -0.0726
94 V A 0.0000
95 N A -1.2065
96 I A 0.0000
97 D A -2.4116
98 V A 0.0000
99 D A -3.2123
100 S A 0.0000
101 K A -4.0307
102 E A -4.1512
103 K A -4.2409
104 K A -3.7383
105 E A -3.6505
106 I A 0.0000
107 D A -2.2104
108 L A 0.0000
109 T A -1.6606
110 V A 0.0000
111 N A -1.9627
112 V A 0.0000
113 T A -1.0184
114 I A 0.0000
115 Q A -1.6060
116 A A -1.2144
117 A A -0.6013
118 Y A 0.2704
119 T A -0.1397
120 N A -0.9702
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Laboratory of Theory of Biopolymers 2018