Project name: query_structure

Status: done

Started: 2026-03-16 22:52:24
Settings
Chain sequence(s) A: ACKGVFDACTPGKNECCPNRVCSDKHKWCKWKL
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:34)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:34)
Show buried residues

Minimal score value
-3.4701
Maximal score value
1.6042
Average score
-1.1892
Total score value
-39.244

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A -0.2028
2 C A -1.0352
3 K A -1.7160
4 G A -0.6609
5 V A 1.0306
6 F A 1.6042
7 D A 0.0242
8 A A -0.5783
9 C A -1.2666
10 T A -1.7181
11 P A -1.9625
12 G A -2.0700
13 K A -3.0246
14 N A -2.8796
15 E A -2.8941
16 C A -1.6538
17 C A -1.1273
18 P A -1.2220
19 N A -1.3170
20 R A -0.7551
21 V A -0.4770
22 C A -1.4211
23 S A -1.9530
24 D A -3.4701
25 K A -3.4323
26 H A -2.7263
27 K A -2.9807
28 W A -0.6755
29 C A 0.0000
30 K A 0.4124
31 W A 0.7462
32 K A -0.6817
33 L A 0.8400
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018