Project name: wtVH

Status: done

Started: 2026-03-23 07:38:35
Settings
Chain sequence(s) A: QVQLQQSGPELVKPGASVRMSCKTSGYTFTDYVISWVKQRPGQGLEWIGEIFPRTGSTYYNENFKATATLTADKSSNTAYMQLSSLTSEDSAAYFCAFITSVDWAMEYWGQGTSVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:59)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:00)
Show buried residues

Minimal score value
-3.1744
Maximal score value
1.0638
Average score
-0.7175
Total score value
-85.3847

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.2875
2 V A -0.7526
3 Q A -1.0146
4 L A 0.0000
5 Q A -1.7002
6 Q A -1.2692
7 S A -1.1992
8 G A -0.8390
9 P A -0.6001
10 E A -0.5313
11 L A 0.6979
12 V A -0.4603
13 K A -1.8288
14 P A -1.7714
15 G A -1.0669
16 A A -0.7678
17 S A -1.0294
18 V A 0.0000
19 R A -2.0583
20 M A 0.0000
21 S A -0.7284
22 C A 0.0000
23 K A -1.5639
24 T A 0.0000
25 S A -1.0896
26 G A -0.8497
27 Y A -0.5277
28 T A -0.6838
29 F A 0.0000
30 T A -1.7179
31 D A -1.4479
32 Y A -0.4156
33 V A 0.0000
34 I A 0.0000
35 S A 0.0000
36 W A 0.0000
37 V A 0.0000
38 K A -0.2855
39 Q A -0.8908
40 R A -1.6664
41 P A -1.3947
42 G A -1.4008
43 Q A -1.8034
44 G A -0.8769
45 L A 0.1681
46 E A -0.1905
47 W A -0.0421
48 I A 0.0000
49 G A 0.0000
50 E A 0.3801
51 I A 0.0000
52 F A -0.3180
53 P A 0.0000
54 R A -2.3821
55 T A -1.1155
56 G A -1.0708
57 S A -0.4014
58 T A 0.4675
59 Y A 0.8674
60 Y A -0.3983
61 N A -1.4117
62 E A -2.7013
63 N A -2.4890
64 F A -1.7253
65 K A -2.2970
66 A A -1.2338
67 T A -0.7483
68 A A 0.0000
69 T A -0.4426
70 L A 0.0000
71 T A -0.3742
72 A A -1.1073
73 D A -1.8046
74 K A -2.6352
75 S A -1.5106
76 S A -1.3849
77 N A -1.7855
78 T A 0.0000
79 A A 0.0000
80 Y A -0.2842
81 M A 0.0000
82 Q A -1.1143
83 L A 0.0000
84 S A -0.5651
85 S A -0.5866
86 L A -0.8782
87 T A -1.2391
88 S A -1.9137
89 E A -3.1744
90 D A -2.8620
91 S A -1.4371
92 A A -0.8977
93 A A -0.5220
94 Y A 0.0000
95 F A 0.0386
96 C A 0.0000
97 A A 0.0000
98 F A 0.0000
99 I A 0.0000
100 T A -0.0695
101 S A 0.1361
102 V A 1.0638
103 D A -0.5911
104 W A 0.3449
105 A A -0.0467
106 M A 0.0437
107 E A -1.1100
108 Y A -0.2178
109 W A -0.0695
110 G A -0.7463
111 Q A -1.3008
112 G A -0.8791
113 T A 0.0000
114 S A -0.5418
115 V A 0.0000
116 T A -0.9043
117 V A 0.0000
118 S A -1.5032
119 S A -1.0487
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Laboratory of Theory of Biopolymers 2018