| Chain sequence(s) |
A: QVQLQQSGPELVKPGASVRMSCKTSGYTFTDYVISWVKQRPGQGLEWIGEIFPRTGSTYYNENFKATATLTADKSSNTAYMQLSSLTSEDSAAYFCAFITSVDWAMEYWGQGTSVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:59)
[INFO] Main: Simulation completed successfully. (00:01:00)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.2875 | |
| 2 | V | A | -0.7526 | |
| 3 | Q | A | -1.0146 | |
| 4 | L | A | 0.0000 | |
| 5 | Q | A | -1.7002 | |
| 6 | Q | A | -1.2692 | |
| 7 | S | A | -1.1992 | |
| 8 | G | A | -0.8390 | |
| 9 | P | A | -0.6001 | |
| 10 | E | A | -0.5313 | |
| 11 | L | A | 0.6979 | |
| 12 | V | A | -0.4603 | |
| 13 | K | A | -1.8288 | |
| 14 | P | A | -1.7714 | |
| 15 | G | A | -1.0669 | |
| 16 | A | A | -0.7678 | |
| 17 | S | A | -1.0294 | |
| 18 | V | A | 0.0000 | |
| 19 | R | A | -2.0583 | |
| 20 | M | A | 0.0000 | |
| 21 | S | A | -0.7284 | |
| 22 | C | A | 0.0000 | |
| 23 | K | A | -1.5639 | |
| 24 | T | A | 0.0000 | |
| 25 | S | A | -1.0896 | |
| 26 | G | A | -0.8497 | |
| 27 | Y | A | -0.5277 | |
| 28 | T | A | -0.6838 | |
| 29 | F | A | 0.0000 | |
| 30 | T | A | -1.7179 | |
| 31 | D | A | -1.4479 | |
| 32 | Y | A | -0.4156 | |
| 33 | V | A | 0.0000 | |
| 34 | I | A | 0.0000 | |
| 35 | S | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | V | A | 0.0000 | |
| 38 | K | A | -0.2855 | |
| 39 | Q | A | -0.8908 | |
| 40 | R | A | -1.6664 | |
| 41 | P | A | -1.3947 | |
| 42 | G | A | -1.4008 | |
| 43 | Q | A | -1.8034 | |
| 44 | G | A | -0.8769 | |
| 45 | L | A | 0.1681 | |
| 46 | E | A | -0.1905 | |
| 47 | W | A | -0.0421 | |
| 48 | I | A | 0.0000 | |
| 49 | G | A | 0.0000 | |
| 50 | E | A | 0.3801 | |
| 51 | I | A | 0.0000 | |
| 52 | F | A | -0.3180 | |
| 53 | P | A | 0.0000 | |
| 54 | R | A | -2.3821 | |
| 55 | T | A | -1.1155 | |
| 56 | G | A | -1.0708 | |
| 57 | S | A | -0.4014 | |
| 58 | T | A | 0.4675 | |
| 59 | Y | A | 0.8674 | |
| 60 | Y | A | -0.3983 | |
| 61 | N | A | -1.4117 | |
| 62 | E | A | -2.7013 | |
| 63 | N | A | -2.4890 | |
| 64 | F | A | -1.7253 | |
| 65 | K | A | -2.2970 | |
| 66 | A | A | -1.2338 | |
| 67 | T | A | -0.7483 | |
| 68 | A | A | 0.0000 | |
| 69 | T | A | -0.4426 | |
| 70 | L | A | 0.0000 | |
| 71 | T | A | -0.3742 | |
| 72 | A | A | -1.1073 | |
| 73 | D | A | -1.8046 | |
| 74 | K | A | -2.6352 | |
| 75 | S | A | -1.5106 | |
| 76 | S | A | -1.3849 | |
| 77 | N | A | -1.7855 | |
| 78 | T | A | 0.0000 | |
| 79 | A | A | 0.0000 | |
| 80 | Y | A | -0.2842 | |
| 81 | M | A | 0.0000 | |
| 82 | Q | A | -1.1143 | |
| 83 | L | A | 0.0000 | |
| 84 | S | A | -0.5651 | |
| 85 | S | A | -0.5866 | |
| 86 | L | A | -0.8782 | |
| 87 | T | A | -1.2391 | |
| 88 | S | A | -1.9137 | |
| 89 | E | A | -3.1744 | |
| 90 | D | A | -2.8620 | |
| 91 | S | A | -1.4371 | |
| 92 | A | A | -0.8977 | |
| 93 | A | A | -0.5220 | |
| 94 | Y | A | 0.0000 | |
| 95 | F | A | 0.0386 | |
| 96 | C | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | F | A | 0.0000 | |
| 99 | I | A | 0.0000 | |
| 100 | T | A | -0.0695 | |
| 101 | S | A | 0.1361 | |
| 102 | V | A | 1.0638 | |
| 103 | D | A | -0.5911 | |
| 104 | W | A | 0.3449 | |
| 105 | A | A | -0.0467 | |
| 106 | M | A | 0.0437 | |
| 107 | E | A | -1.1100 | |
| 108 | Y | A | -0.2178 | |
| 109 | W | A | -0.0695 | |
| 110 | G | A | -0.7463 | |
| 111 | Q | A | -1.3008 | |
| 112 | G | A | -0.8791 | |
| 113 | T | A | 0.0000 | |
| 114 | S | A | -0.5418 | |
| 115 | V | A | 0.0000 | |
| 116 | T | A | -0.9043 | |
| 117 | V | A | 0.0000 | |
| 118 | S | A | -1.5032 | |
| 119 | S | A | -1.0487 |