Project name: query_structure

Status: done

Started: 2026-03-16 20:29:31
Settings
Chain sequence(s) A: LPAPKNLVVSEVTEDSLRLSWTYDRDGYDSFLIQYQESEKVGEAINLTVPGSERSYDLTGLKPGTEYTVSIYGVHNVYKDTNMRGLPLSAEFTT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:57)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:58)
Show buried residues

Minimal score value
-3.5317
Maximal score value
1.31
Average score
-1.1244
Total score value
-105.6939

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 L A 0.6091
2 P A -0.1567
3 A A -0.1380
4 P A 0.0000
5 K A -2.2658
6 N A -1.3256
7 L A -0.1320
8 V A 0.8983
9 V A 0.0923
10 S A -0.6413
11 E A -1.7926
12 V A -0.9163
13 T A -1.7435
14 E A -2.8344
15 D A -2.8200
16 S A -2.1271
17 L A 0.0000
18 R A -1.4243
19 L A 0.0000
20 S A -0.4845
21 W A 0.0000
22 T A -1.6381
23 Y A -2.4718
24 D A -3.3422
25 R A -3.5317
26 D A -3.4420
27 G A -2.5046
28 Y A 0.0000
29 D A -2.7556
30 S A -1.8265
31 F A 0.0000
32 L A -0.3760
33 I A 0.0000
34 Q A -0.5230
35 Y A -0.6477
36 Q A -1.5542
37 E A -2.2395
38 S A -2.1502
39 E A -2.6155
40 K A -1.9945
41 V A -0.0307
42 G A -0.9491
43 E A -2.1034
44 A A -0.9846
45 I A -0.4368
46 N A -1.0167
47 L A -0.1237
48 T A -0.1903
49 V A 0.0000
50 P A -1.1805
51 G A -1.7679
52 S A -1.5636
53 E A -1.4399
54 R A -1.1281
55 S A -0.8002
56 Y A -0.8704
57 D A -1.7995
58 L A 0.0000
59 T A -1.4389
60 G A -1.5254
61 L A 0.0000
62 K A -3.0058
63 P A -2.5356
64 G A -1.8459
65 T A -2.2364
66 E A -2.7451
67 Y A 0.0000
68 T A -1.4767
69 V A 0.0000
70 S A 0.0000
71 I A 0.0000
72 Y A 0.1813
73 G A 0.0000
74 V A 0.0000
75 H A -1.7684
76 N A -2.4681
77 V A -0.6214
78 Y A -0.1356
79 K A -2.1839
80 D A -2.6729
81 T A -1.8982
82 N A -2.5342
83 M A -1.1622
84 R A -1.5376
85 G A 0.1591
86 L A 1.3100
87 P A 0.3944
88 L A 0.0274
89 S A -0.4020
90 A A -0.6814
91 E A -2.1569
92 F A 0.0000
93 T A -1.6333
94 T A -1.8993
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Laboratory of Theory of Biopolymers 2018