Project name: query_structure

Status: done

Started: 2026-03-16 20:31:07
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Chain sequence(s) A: LPAPKNLVVSRVTEDSARLSWAWNRHDFDSFLIQYQESEKVGEAIVLTVPGSERSYDLTGLKPGTEYTVSIYGVHWTVLRPFIDSNPLSAIFTT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:55)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:56)
Show buried residues

Minimal score value
-3.4005
Maximal score value
2.4901
Average score
-0.5473
Total score value
-51.4476

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 L A 1.3984
2 P A 0.2625
3 A A -0.3615
4 P A -0.7289
5 K A -1.8055
6 N A -1.3553
7 L A 0.0510
8 V A 1.5596
9 V A 0.9643
10 S A -0.5607
11 R A -2.0137
12 V A -1.0002
13 T A -1.7547
14 E A -2.9836
15 D A -2.6406
16 S A -2.0291
17 A A 0.0000
18 R A -1.1616
19 L A 0.0000
20 S A -0.0050
21 W A 0.0000
22 A A -1.1464
23 W A -2.0263
24 N A -2.6984
25 R A -3.4005
26 H A -3.2286
27 D A -3.2320
28 F A -1.7388
29 D A -1.7657
30 S A -0.9680
31 F A 0.0000
32 L A 0.7119
33 I A 0.0000
34 Q A 0.4253
35 Y A 0.3657
36 Q A -0.7812
37 E A -1.7426
38 S A -1.5256
39 E A -2.4149
40 K A -1.9472
41 V A 0.0339
42 G A -0.9654
43 E A -1.6253
44 A A -0.3620
45 I A 0.7504
46 V A 1.4583
47 L A 1.1166
48 T A 0.3585
49 V A 0.0000
50 P A -1.1099
51 G A -1.7650
52 S A -1.5826
53 E A -1.5361
54 R A -1.0874
55 S A -0.6957
56 Y A -0.7687
57 D A -1.6351
58 L A 0.0000
59 T A -1.3221
60 G A -1.4711
61 L A 0.0000
62 K A -2.9587
63 P A -2.5054
64 G A -1.8250
65 T A 0.0000
66 E A -1.9133
67 Y A 0.0000
68 T A 0.0483
69 V A 0.0000
70 S A 0.1672
71 I A 0.0000
72 Y A 0.3314
73 G A 0.0000
74 V A 0.0000
75 H A 0.1704
76 W A 1.2816
77 T A 1.5215
78 V A 2.4901
79 L A 2.0419
80 R A 0.3624
81 P A 0.9168
82 F A 2.0953
83 I A 1.7114
84 D A 0.3509
85 S A -0.3729
86 N A -1.2675
87 P A -0.7477
88 L A 0.0000
89 S A -0.0691
90 A A 1.0307
91 I A 1.8650
92 F A 0.0000
93 T A -0.7932
94 T A -1.8931
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Laboratory of Theory of Biopolymers 2018