Project name: 2C4

Status: done

Started: 2025-08-15 03:31:02
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Chain sequence(s) H: VKESEGGLFKPTDTLTLTCTVSGFSLSTYGMSWVRQAPGNGLEWIGAVGQSGSSYYAGWAKSRSTITRNTNLNTVTLKMTSLTAADTATYFCARGISDGYSDGLDIWGPGTLVTISS
L: AIDMTQTPSPVSAAVGGTATINCQASESIGSSLAWYQQKPGQPPKLLIYDASDLASGVPSRFKGSGSGTQFTLTISGVQSDDAATYYCQQGYSSNVENAFGGGTIVEIR
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:34)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:36)
Show buried residues

Minimal score value
-2.2983
Maximal score value
1.0751
Average score
-0.4016
Total score value
-90.7661

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
4 V H -0.0825
5 K H -0.8199
6 E H 0.0000
7 S H -1.0962
8 E H -1.7264
9 G H -0.4758
11 G H 0.2204
12 L H 1.0238
13 F H -0.0402
14 K H -1.5273
15 P H -1.0038
16 T H -0.8715
17 D H -1.0538
18 T H -0.7959
19 L H 0.0000
20 T H -0.5079
21 L H 0.0000
22 T H -0.5947
23 C H 0.0000
24 T H -0.2027
25 V H 0.0000
26 S H -0.3936
27 G H -0.4193
28 F H -0.0709
29 S H -0.1974
30 L H 0.0000
35 S H -0.6417
36 T H -0.0046
37 Y H 0.0405
38 G H -0.3857
39 M H 0.0000
40 S H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.6594
45 A H -0.6861
46 P H -0.8131
47 G H -1.2660
48 N H -1.7618
49 G H -1.0758
50 L H 0.0000
51 E H -0.6030
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 A H 0.3067
56 V H 0.0000
57 G H -0.5516
58 Q H -0.8126
59 S H -0.6126
63 G H -0.6746
64 S H -0.2039
65 S H 0.3192
66 Y H 1.0751
67 Y H 0.3345
68 A H 0.0000
69 G H -0.4158
70 W H 0.0450
71 A H 0.0000
72 K H -1.2476
74 S H -0.9866
75 R H -1.0048
76 S H 0.0000
77 T H -0.5729
78 I H 0.0000
79 T H -0.6046
80 R H -0.9354
81 N H -1.0262
82 T H -0.9036
83 N H -0.9755
84 L H 0.4366
85 N H -0.4273
86 T H -0.3861
87 V H 0.0000
88 T H -0.4732
89 L H 0.0000
90 K H -0.9965
91 M H 0.0000
92 T H -0.6819
93 S H -0.7099
94 L H 0.0000
95 T H -0.3910
96 A H -0.1846
97 A H 0.0443
98 D H 0.0000
99 T H 0.2885
100 A H 0.0000
101 T H 0.1834
102 Y H 0.0000
103 F H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0403
107 G H -0.3168
108 I H 0.0061
109 S H -0.7231
110 D H -1.6819
111 G H -0.7478
112A Y H 0.3392
112 S H -0.1745
113 D H -0.5919
114 G H 0.0000
115 L H 0.0000
116 D H -0.6702
117 I H 0.1903
118 W H -0.1825
119 G H 0.0000
120 P H -0.5738
121 G H -0.5648
122 T H 0.0000
123 L H 0.6104
124 V H 0.0000
125 T H 0.4418
126 I H 0.0000
127 S H -0.3753
128 S H -0.5845
1 A L -0.8246
2 I L 0.0000
3 D L -2.2983
4 M L 0.0000
5 T L -1.2837
6 Q L -0.9858
7 T L -0.6159
8 P L -0.2039
9 S L -0.1401
10 P L 0.0581
11 V L 0.2010
12 S L -0.2941
13 A L 0.0000
14 A L -0.3014
15 V L 0.6419
16 G L -0.2084
17 G L -0.2409
18 T L -0.2544
19 A L 0.0000
20 T L -0.2753
21 I L 0.0000
22 N L -0.8826
23 C L 0.0000
24 Q L -2.0186
25 A L 0.0000
26 S L -1.5204
27 E L -1.3527
28 S L -0.8702
29 I L 0.0000
36 G L -0.7663
37 S L -0.5852
38 S L -0.1650
39 L L 0.0000
40 A L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.0219
46 P L -0.9339
47 G L -1.1127
48 Q L -1.4643
49 P L -0.8999
50 P L 0.0000
51 K L -1.3021
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.6162
56 D L -1.2837
57 A L 0.0000
65 S L -1.3363
66 D L -1.6208
67 L L -0.7401
68 A L -0.5321
69 S L -0.5571
70 G L -0.4795
71 V L -0.5606
72 P L -0.4981
74 S L -0.6877
75 R L -0.9653
76 F L 0.0000
77 K L -1.5792
78 G L 0.0000
79 S L -1.0930
80 G L -1.0179
83 S L -1.0192
84 G L -0.9598
85 T L -1.1807
86 Q L -1.4586
87 F L 0.0000
88 T L -0.8257
89 L L 0.0000
90 T L -0.6455
91 I L 0.0000
92 S L -0.6977
93 G L -0.5112
94 V L 0.0000
95 Q L -1.4138
96 S L -1.4356
97 D L -2.1634
98 D L 0.0000
99 A L -0.7946
100 A L 0.0000
101 T L 0.2127
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 G L 0.0757
108 Y L 0.3782
109 S L -0.1861
110 S L -0.5101
113 N L -0.7591
114 V L 0.0939
115 E L -0.7345
116 N L -0.3633
117 A L -0.4783
118 F L 0.0000
119 G L 0.0000
120 G L -1.0116
121 G L 0.0000
122 T L 0.0000
123 I L 0.8854
124 V L 0.0000
125 E L -0.6691
126 I L -0.8099
127 R L -1.4982
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Laboratory of Theory of Biopolymers 2018