Project name: Pep5-Mut5-KLVFF

Status: done

Started: 2026-02-11 05:43:16
Settings
Chain sequence(s) A: RGDGWKPFVIDATVLVALVTHIGGIKLVFF
input PDB
Selected Chain(s) A
Distance of aggregation 5 Å
FoldX usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       runJob:   FoldX not utilized. Treating input pdb file as it was already optimized.    (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:01)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:01)
Show buried residues

Minimal score value
-1.9577
Maximal score value
2.6316
Average score
0.5937
Total score value
17.8116

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 R A -1.9332
2 G A -1.1357
3 D A -1.9577
4 G A -0.5920
5 W A 0.7682
6 K A -1.2952
7 P A -0.2110
8 F A 2.0458
9 V A 2.5164
10 I A 2.0131
11 D A -1.4108
12 A A -0.2662
13 T A 0.3722
14 V A 1.5835
15 L A 2.1354
16 V A 2.0742
17 A A 0.8181
18 L A 1.8627
19 V A 2.0459
20 T A 0.0886
21 H A -0.7706
22 I A 1.1179
23 G A -0.0156
24 G A -0.2015
25 I A 0.5021
26 K A -1.2572
27 L A 1.5600
28 V A 2.4237
29 F A 2.6316
30 F A 2.2989
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Laboratory of Theory of Biopolymers 2018