Project name: LG8W

Status: done

Started: 2024-12-06 06:55:24
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Chain sequence(s) A: SNDIYFNFQRFNETNLILQRDASVSSSGQLRLTNLNGNGEPRVGSLGRAFYSAPIQIWDNTTGTVASFATSFTFNIQVPNNAGPADGLAFALVPVGSQPKDKGGFLGLFDGSNSNFHTVAVEFDTLYNKDWDPTERHIGIDVNSIRSIKTTRWDFVNGENAEVLITYDSSTNLLVASLVYPSQKTSFIVSDTVDLKSVLPEWVSVGFSATTGINKGNVETNDVLSWSFASKLS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:20)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:21)
Show buried residues

Minimal score value
-2.7691
Maximal score value
2.0576
Average score
-0.6798
Total score value
-158.3965

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 S A -1.7457
2 N A -2.6537
3 D A -2.6144
4 I A -0.4066
5 Y A 0.7951
6 F A 0.0000
7 N A -0.8285
8 F A -1.3334
9 Q A -2.1020
10 R A -2.7007
11 F A 0.0000
12 N A -2.7518
13 E A -2.5034
14 T A -1.7245
15 N A -1.8755
16 L A 0.0000
17 I A 0.3369
18 L A -0.1520
19 Q A -0.9436
20 R A -2.1544
21 D A -1.4115
22 A A 0.0000
23 S A -1.0148
24 V A -1.1269
25 S A -0.9575
26 S A -0.5297
27 S A -0.8078
28 G A 0.0000
29 Q A -1.2809
30 L A 0.0000
31 R A -0.6451
32 L A 0.0000
33 T A 0.0000
34 N A -1.2968
35 L A -1.4679
36 N A -2.3219
37 G A -2.1284
38 N A -2.2593
39 G A -2.1797
40 E A -2.4950
41 P A 0.0000
42 R A -1.3957
43 V A -0.4248
44 G A 0.0565
45 S A 0.0000
46 L A 0.0000
47 G A 0.0000
48 R A 0.0000
49 A A 0.0000
50 F A 0.0000
51 Y A -0.1739
52 S A -0.2315
53 A A 0.0694
54 P A 0.2397
55 I A 0.0000
56 Q A -0.6427
57 I A 0.0000
58 W A -0.8805
59 D A -1.2314
60 N A -1.8013
61 T A -0.8990
62 T A -0.7213
63 G A -1.0002
64 T A -0.6336
65 V A -0.9940
66 A A 0.0000
67 S A -1.0883
68 F A 0.0000
69 A A 0.0870
70 T A 0.0000
71 S A 0.0572
72 F A 0.0000
73 T A -0.6097
74 F A 0.0000
75 N A -1.1552
76 I A 0.0000
77 Q A -1.7412
78 V A -1.3180
79 P A -1.6519
80 N A -2.1345
81 N A -1.9701
82 A A -1.4443
83 G A -1.0409
84 P A -0.3105
85 A A 0.0000
86 D A 0.0000
87 G A 0.0000
88 L A 0.0000
89 A A 0.0000
90 F A 0.0000
91 A A 0.0000
92 L A 0.0000
93 V A 0.0000
94 P A 0.3309
95 V A 1.1101
96 G A -0.0858
97 S A -0.4925
98 Q A -1.5270
99 P A -1.6786
100 K A -1.8167
101 D A -2.0501
102 K A -1.2903
103 G A 0.0000
104 G A -0.0754
105 F A -1.0287
106 L A 0.0000
107 G A 0.0000
108 L A 0.0000
109 F A 0.0000
110 D A -1.9840
111 G A -1.6614
112 S A -1.5249
113 N A -2.0632
114 S A -1.7369
115 N A -1.8604
116 F A -1.0426
117 H A -0.7542
118 T A 0.0000
119 V A 0.0000
120 A A 0.0000
121 V A 0.0000
122 E A 0.0000
123 F A 0.0000
124 D A 0.0000
125 T A 0.0000
126 L A 0.0363
127 Y A -0.3784
128 N A -1.5032
129 K A -2.4414
130 D A -2.7691
131 W A -1.7942
132 D A -1.6199
133 P A -1.6652
134 T A -1.3214
135 E A -2.4241
136 R A -1.9632
137 H A 0.0000
138 I A 0.0000
139 G A 0.0000
140 I A 0.0000
141 D A 0.0000
142 V A -0.1709
143 N A -0.8753
144 S A -1.1368
145 I A 0.0000
146 R A -2.0459
147 S A -0.7819
148 I A 0.0134
149 K A -0.9044
150 T A -0.8334
151 T A -1.1731
152 R A -2.5108
153 W A 0.0000
154 D A -2.5164
155 F A -1.3502
156 V A -1.1103
157 N A -1.7213
158 G A -1.4491
159 E A -1.8227
160 N A -1.7332
161 A A 0.0000
162 E A -1.2293
163 V A 0.0000
164 L A 1.2530
165 I A 0.0000
166 T A 0.2139
167 Y A 0.0000
168 D A -0.9198
169 S A -0.9501
170 S A -0.5455
171 T A -0.5733
172 N A -0.8336
173 L A -0.2275
174 L A 0.0000
175 V A 0.6820
176 A A 0.0000
177 S A 1.2329
178 L A 0.0000
179 V A -0.1745
180 Y A 0.0000
181 P A -1.4434
182 S A -1.3450
183 Q A -1.8568
184 K A -2.1374
185 T A -1.2959
186 S A -0.3527
187 F A 0.6094
188 I A 2.0576
189 V A 0.0000
190 S A 0.1840
191 D A -0.3928
192 T A -0.5030
193 V A 0.0000
194 D A -1.3558
195 L A 0.0000
196 K A -1.5102
197 S A -0.8849
198 V A -0.7251
199 L A 0.0000
200 P A -0.3959
201 E A -0.6635
202 W A 0.5930
203 V A 0.0000
204 S A 0.0000
205 V A 0.0000
206 G A 0.0000
207 F A 0.0000
208 S A 0.0000
209 A A 0.0000
210 T A 0.0000
211 T A 0.0000
212 G A 0.0000
213 I A 0.7707
214 N A -1.1677
215 K A -2.0693
216 G A -1.6033
217 N A -0.9682
218 V A 0.0000
219 E A 0.0000
220 T A -0.7282
221 N A 0.0000
222 D A 0.0000
223 V A 0.0000
224 L A -0.7403
225 S A -1.0863
226 W A 0.0000
227 S A -0.0895
228 F A 0.0000
229 A A -0.0805
230 S A 0.0000
231 K A -2.4552
232 L A 0.0000
233 S A -1.2246
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Laboratory of Theory of Biopolymers 2018