Project name: query_structure

Status: done

Started: 2026-03-16 22:47:12
Settings
Chain sequence(s) A: VSSVPTKLEVVAATPTSLLISWDAPAVTVLYYFITYGETGPASYGAQEFAVPGSKSTATISGLKPGVDYTITVYAISNKWKYSPISINYRT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:42)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:43)
Show buried residues

Minimal score value
-2.6438
Maximal score value
1.8554
Average score
-0.4672
Total score value
-42.5118

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.8554
2 S A 0.9274
3 S A 0.7013
4 V A 0.5817
5 P A 0.0000
6 T A -1.5934
7 K A -2.5852
8 L A 0.0000
9 E A -1.7770
10 V A 0.1690
11 V A 1.5743
12 A A 0.9096
13 A A 0.2976
14 T A -0.3501
15 P A -1.1335
16 T A -1.0046
17 S A -0.5361
18 L A 0.0000
19 L A 0.7607
20 I A 0.0000
21 S A -0.9264
22 W A 0.0000
23 D A -2.6438
24 A A -1.1838
25 P A 0.1400
26 A A 0.5828
27 V A 0.8236
28 T A 0.0130
29 V A 0.0778
30 L A 0.6458
31 Y A 0.5326
32 Y A 0.0000
33 F A 0.7142
34 I A 0.0000
35 T A -0.7514
36 Y A 0.0000
37 G A -1.2618
38 E A -2.0097
39 T A -1.4659
40 G A -0.7820
41 P A -0.4049
42 A A -0.0839
43 S A -0.3132
44 Y A 0.6648
45 G A -0.5027
46 A A -1.0025
47 Q A -1.6924
48 E A -1.8769
49 F A -0.3830
50 A A 0.2728
51 V A 0.0000
52 P A -0.3192
53 G A -0.2231
54 S A -0.8878
55 K A -1.9188
56 S A -1.3642
57 T A -0.7383
58 A A 0.0000
59 T A 0.2360
60 I A 0.0000
61 S A -0.6596
62 G A -1.0314
63 L A 0.0000
64 K A -2.4447
65 P A -1.6524
66 G A -1.4431
67 V A -1.5531
68 D A -2.2353
69 Y A 0.0000
70 T A -1.1682
71 I A 0.0000
72 T A -0.2018
73 V A 0.0000
74 Y A 0.9192
75 A A 0.0000
76 I A 0.0000
77 S A -0.5387
78 N A -1.7477
79 K A -2.0524
80 W A -0.3326
81 K A -0.9356
82 Y A 0.9457
83 S A 0.6731
84 P A 0.4955
85 I A 0.3525
86 S A -0.3213
87 I A -0.6958
88 N A -1.8247
89 Y A -1.5625
90 R A -2.6184
91 T A -1.6433
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018