| Chain sequence(s) |
A: QVQLVESGGGLVQPGGSLRLSCAASGYFYSSNYCLGWFRQAPGKEREGVAQINIAPGRIYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCASTAGNMYYGLRGPADFDYWGQGTQVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:43)
[INFO] Main: Simulation completed successfully. (00:02:44)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -0.9964 | |
| 2 | V | A | 0.3281 | |
| 3 | Q | A | -0.4320 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.7032 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.5617 | |
| 8 | G | A | -1.0200 | |
| 9 | G | A | -0.7646 | |
| 10 | G | A | -0.0331 | |
| 11 | L | A | 1.0184 | |
| 12 | V | A | -0.0597 | |
| 13 | Q | A | -1.3953 | |
| 14 | P | A | -1.8093 | |
| 15 | G | A | -1.6015 | |
| 16 | G | A | -1.1092 | |
| 17 | S | A | -1.5148 | |
| 18 | L | A | -1.1060 | |
| 19 | R | A | -2.3144 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.4759 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.2832 | |
| 24 | A | A | -0.0007 | |
| 25 | S | A | -0.1254 | |
| 26 | G | A | 0.1524 | |
| 27 | Y | A | 1.0433 | |
| 28 | F | A | 0.0000 | |
| 29 | Y | A | 0.0000 | |
| 30 | S | A | -0.3440 | |
| 31 | S | A | -0.5156 | |
| 32 | N | A | -0.3375 | |
| 33 | Y | A | -0.0433 | |
| 34 | C | A | 0.0000 | |
| 35 | L | A | 0.0000 | |
| 36 | G | A | 0.0000 | |
| 37 | W | A | 0.0000 | |
| 38 | F | A | 0.0000 | |
| 39 | R | A | -1.1428 | |
| 40 | Q | A | -1.7987 | |
| 41 | A | A | -1.8497 | |
| 42 | P | A | -1.3471 | |
| 43 | G | A | -1.9074 | |
| 44 | K | A | -3.2279 | |
| 45 | E | A | -3.3393 | |
| 46 | R | A | -2.3771 | |
| 47 | E | A | -1.7434 | |
| 48 | G | A | -0.7561 | |
| 49 | V | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | Q | A | 0.0000 | |
| 52 | I | A | 0.0000 | |
| 53 | N | A | 0.2281 | |
| 54 | I | A | 0.1614 | |
| 55 | A | A | -0.0652 | |
| 56 | P | A | -0.4415 | |
| 57 | G | A | -0.8080 | |
| 58 | R | A | -0.8481 | |
| 59 | I | A | 0.8268 | |
| 60 | Y | A | 0.4721 | |
| 61 | Y | A | -0.2550 | |
| 62 | A | A | 0.0000 | |
| 63 | D | A | -2.3984 | |
| 64 | S | A | -1.8057 | |
| 65 | V | A | 0.0000 | |
| 66 | K | A | -2.5598 | |
| 67 | G | A | -1.8379 | |
| 68 | R | A | -1.7775 | |
| 69 | F | A | 0.0000 | |
| 70 | T | A | -0.8318 | |
| 71 | I | A | 0.0000 | |
| 72 | S | A | -0.2841 | |
| 73 | R | A | -0.9241 | |
| 74 | D | A | -1.7092 | |
| 75 | N | A | -1.9513 | |
| 76 | S | A | -1.8270 | |
| 77 | K | A | -2.5233 | |
| 78 | N | A | -1.7740 | |
| 79 | T | A | -1.1632 | |
| 80 | L | A | 0.0000 | |
| 81 | Y | A | -0.6306 | |
| 82 | L | A | 0.0000 | |
| 83 | Q | A | -1.6447 | |
| 84 | M | A | 0.0000 | |
| 85 | N | A | -2.0888 | |
| 86 | S | A | -1.6163 | |
| 87 | L | A | 0.0000 | |
| 88 | R | A | -3.0018 | |
| 89 | A | A | -2.0479 | |
| 90 | E | A | -2.4636 | |
| 91 | D | A | 0.0000 | |
| 92 | T | A | -0.9614 | |
| 93 | A | A | 0.0000 | |
| 94 | V | A | -0.3308 | |
| 95 | Y | A | 0.0000 | |
| 96 | Y | A | -0.2089 | |
| 97 | C | A | 0.0000 | |
| 98 | A | A | 0.0000 | |
| 99 | S | A | 0.0000 | |
| 100 | T | A | 0.0000 | |
| 101 | A | A | -0.7355 | |
| 102 | G | A | -0.6774 | |
| 103 | N | A | -0.5303 | |
| 104 | M | A | 1.2412 | |
| 105 | Y | A | 2.2547 | |
| 106 | Y | A | 1.8896 | |
| 107 | G | A | 1.3718 | |
| 108 | L | A | 1.5523 | |
| 109 | R | A | 0.3335 | |
| 110 | G | A | -0.5314 | |
| 111 | P | A | -0.9025 | |
| 112 | A | A | -0.9979 | |
| 113 | D | A | -1.5172 | |
| 114 | F | A | 0.0000 | |
| 115 | D | A | -1.8941 | |
| 116 | Y | A | -0.5704 | |
| 117 | W | A | -0.1422 | |
| 118 | G | A | -0.0993 | |
| 119 | Q | A | -0.8796 | |
| 120 | G | A | 0.0000 | |
| 121 | T | A | -0.7089 | |
| 122 | Q | A | -0.9501 | |
| 123 | V | A | 0.0000 | |
| 124 | T | A | -0.3197 | |
| 125 | V | A | 0.0000 | |
| 126 | S | A | -0.7532 | |
| 127 | S | A | -0.4744 |