Project name: 1-10C1

Status: done

Started: 2025-07-01 05:05:27
Settings
Chain sequence(s) H: QVQLQQPGTELVKPGDSVKMSCKASGYTLTSYNLHWVKQTPGQGLEWIGAFYPGNGATSNNQKFKGKATLTADKSSSIAYMQLSSLTSEDSAVYYCARDGYYPWFAHWGQGTLVTVSA
L: DIVMTQSHKFMSTSLGDRVTITCKASQDVGDAIAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQSEDLADYFCQQYTRYPYTFGGGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:08)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:10)
Show buried residues

Minimal score value
-2.9156
Maximal score value
1.8375
Average score
-0.5599
Total score value
-125.9677

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.4789
2 V H -0.9738
3 Q H -1.8261
4 L H 0.0000
5 Q H -1.9749
6 Q H 0.0000
7 P H -0.8133
8 G H -0.7242
9 T H 0.1211
11 E H 0.0438
12 L H 1.1790
13 V H -0.1310
14 K H -1.2820
15 P H -1.3642
16 G H -1.4261
17 D H -1.6117
18 S H -1.3679
19 V H 0.0000
20 K H -1.6120
21 M H 0.0000
22 S H -0.6321
23 C H 0.0000
24 K H -1.3555
25 A H 0.0000
26 S H -1.0913
27 G H -0.9678
28 Y H -0.3733
29 T H -0.2759
30 L H 0.0000
35 T H -0.6607
36 S H 0.0129
37 Y H 0.6243
38 N H 0.3183
39 L H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 K H 0.0000
44 Q H -0.4355
45 T H -0.7940
46 P H -0.7873
47 G H -1.2385
48 Q H -1.6931
49 G H -1.0839
50 L H 0.0000
51 E H -0.9149
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 A H 0.0000
56 F H 0.0000
57 Y H 0.0725
58 P H 0.0000
59 G H -0.8992
62 N H -1.4388
63 G H -0.8868
64 A H -0.3262
65 T H -0.2409
66 S H -0.3228
67 N H -1.2221
68 N H 0.0000
69 Q H -2.2901
70 K H -2.3373
71 F H 0.0000
72 K H -2.7958
74 G H -1.8602
75 K H -1.5864
76 A H 0.0000
77 T H -0.8831
78 L H 0.0000
79 T H -0.1667
80 A H -0.5612
81 D H -1.2974
82 K H -1.7644
83 S H -0.9921
84 S H -0.7925
85 S H -0.8693
86 I H -0.7264
87 A H 0.0000
88 Y H -0.2633
89 M H 0.0000
90 Q H -1.1509
91 L H 0.0000
92 S H -1.0199
93 S H -1.0539
94 L H 0.0000
95 T H -1.0456
96 S H -0.9890
97 E H -1.1446
98 D H 0.0000
99 S H -0.1323
100 A H 0.0000
101 V H 0.4497
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H -0.0153
107 D H 0.0000
108 G H 0.0000
109 Y H 1.8375
110 Y H 1.7079
113 P H 0.8113
114 W H 0.6170
115 F H 0.0000
116 A H -0.3193
117 H H -0.8940
118 W H -0.8189
119 G H 0.0000
120 Q H -1.6363
121 G H 0.0000
122 T H 0.0000
123 L H 0.8237
124 V H 0.0000
125 T H 0.2969
126 V H 0.0000
127 S H -0.2723
128 A H -0.2020
1 D L -1.3585
2 I L 0.0000
3 V L 0.8976
4 M L 0.0000
5 T L -0.6022
6 Q L -0.8327
7 S L -1.0278
8 H L -1.1608
9 K L -1.3686
10 F L 0.3935
11 M L 0.0718
12 S L -0.3786
13 T L 0.0000
14 S L -1.1232
15 L L -0.4337
16 G L -1.3413
17 D L -1.9668
18 R L -2.4824
19 V L 0.0000
20 T L -0.5144
21 I L 0.0000
22 T L -0.9284
23 C L 0.0000
24 K L -2.1296
25 A L 0.0000
26 S L -0.9431
27 Q L -1.6637
28 D L -2.2911
29 V L 0.0000
36 G L -1.4739
37 D L -1.5609
38 A L 0.0000
39 I L 0.0000
40 A L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L -0.9605
45 K L -1.2282
46 P L -0.8869
47 G L -1.3806
48 Q L -2.0017
49 S L -1.3532
50 P L 0.0000
51 K L -1.3099
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.0362
56 W L -0.1009
57 A L 0.0000
65 S L -0.5001
66 T L -0.4204
67 R L -1.1322
68 H L -0.6985
69 T L -0.5527
70 G L -0.8930
71 V L 0.0000
72 P L -1.3525
74 D L -2.3259
75 R L -1.8967
76 F L 0.0000
77 T L -0.7835
78 G L 0.0000
79 S L -0.7483
80 G L -1.3877
83 S L -1.5321
84 G L -1.9027
85 T L -2.2868
86 D L -2.9156
87 F L 0.0000
88 T L -0.7813
89 L L 0.0000
90 T L -0.6761
91 I L 0.0000
92 S L -2.0937
93 N L -2.4072
94 V L 0.0000
95 Q L -1.2861
96 S L -1.1308
97 E L -1.7089
98 D L 0.0000
99 L L -0.0749
100 A L 0.0000
101 D L 0.0000
102 Y L 0.0000
103 F L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 Y L 0.0000
108 T L -0.4360
109 R L -0.5992
114 Y L 0.3103
115 P L -0.3892
116 Y L 0.0000
117 T L 0.0079
118 F L 0.0000
119 G L 0.0000
120 G L -0.9669
121 G L 0.0000
122 T L 0.0000
123 K L -0.6958
124 L L 0.0000
125 E L -0.6788
126 I L -0.8457
127 K L -1.5908
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Laboratory of Theory of Biopolymers 2018