Project name: query_structure

Status: done

Started: 2026-03-16 23:25:16
Settings
Chain sequence(s) A: GKPICGETCFKGKCYTPGCTCSYPVCKKN
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:52)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:53)
Show buried residues

Minimal score value
-2.1436
Maximal score value
1.3975
Average score
-0.3293
Total score value
-9.5511

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -1.9263
2 K A -2.0127
3 P A -0.7744
4 I A 0.6290
5 C A 0.0585
6 G A -0.3105
7 E A 0.0030
8 T A 0.1273
9 C A 0.0000
10 F A 0.9641
11 K A -1.1763
12 G A -0.9997
13 K A -1.2896
14 C A -0.1614
15 Y A 0.8657
16 T A 0.0340
17 P A -0.2086
18 G A -0.9227
19 C A -0.8773
20 T A -0.4666
21 C A 0.3221
22 S A 0.6554
23 Y A 1.3975
24 P A 0.9567
25 V A 0.6961
26 C A 0.0000
27 K A -1.1295
28 K A -1.8613
29 N A -2.1436
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Laboratory of Theory of Biopolymers 2018