Project name: query_structure

Status: done

Started: 2026-03-16 19:54:59
Settings
Chain sequence(s) A: AICTGADRPCAACCPCCPGTSCKAESNGVSYCRKDEP
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:22)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:22)
Show buried residues

Minimal score value
-4.093
Maximal score value
2.1874
Average score
-1.0153
Total score value
-37.5661

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A 1.1030
2 I A 2.1874
3 C A 1.3544
4 T A 0.0636
5 G A 0.0000
6 A A -2.5689
7 D A -3.2081
8 R A -2.8889
9 P A -1.2348
10 C A -0.4230
11 A A 0.2081
12 A A 0.4525
13 C A 0.8245
14 C A 0.9480
15 P A 0.4720
16 C A -0.6029
17 C A 0.0536
18 P A -0.8259
19 G A -1.8315
20 T A -2.6791
21 S A -1.6957
22 C A -1.2419
23 K A -1.6070
24 A A -1.0566
25 E A -1.5491
26 S A -1.2197
27 N A -1.5335
28 G A -0.8382
29 V A 0.1576
30 S A -0.6432
31 Y A -1.1652
32 C A 0.0000
33 R A -3.6221
34 K A -4.0930
35 D A -3.9568
36 E A -3.3971
37 P A -1.5086
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018