Project name: 1LYY

Status: done

Started: 2024-11-21 06:04:39
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Chain sequence(s) A: KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNHGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:00)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:00)
Show buried residues

Minimal score value
-4.1597
Maximal score value
1.4027
Average score
-1.1761
Total score value
-152.8877

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -2.4314
2 V A -0.3365
3 F A 0.0000
4 E A -2.2138
5 R A -2.0588
6 C A -1.7032
7 E A -1.9632
8 L A 0.0000
9 A A 0.0000
10 R A -2.9146
11 T A -2.0606
12 L A 0.0000
13 K A -2.8649
14 R A -2.8577
15 L A -1.4660
16 G A -1.7195
17 M A 0.0000
18 D A -2.5253
19 G A -1.8814
20 Y A -1.8790
21 R A -2.6334
22 G A -1.6727
23 I A 0.0000
24 S A -1.4447
25 L A 0.0000
26 A A 0.0000
27 N A -1.1795
28 W A 0.0000
29 M A 0.0000
30 C A 0.0000
31 L A 0.0000
32 A A 0.0000
33 K A -0.8442
34 W A -0.2154
35 E A -0.3633
36 S A -0.5772
37 G A -0.5216
38 Y A 0.0000
39 N A -1.4228
40 T A 0.0000
41 R A -2.4951
42 A A -1.3232
43 T A -0.8719
44 N A -0.6461
45 Y A 0.0835
46 N A -0.8310
47 A A -0.9249
48 G A -0.9613
49 D A -1.7085
50 R A -2.3761
51 S A -1.4669
52 T A -0.8790
53 D A 0.0000
54 Y A 0.0000
55 G A 0.0000
56 I A 0.0000
57 F A 0.0000
58 Q A 0.0000
59 I A 0.0000
60 N A -0.9929
61 S A -1.0283
62 R A -1.6027
63 Y A 0.6963
64 W A 0.0046
65 C A 0.0000
66 N A -1.3951
67 H A -2.1801
68 G A -1.9382
69 K A -2.4483
70 T A -1.4060
71 P A -0.9195
72 G A -0.4703
73 A A -0.2813
74 V A 1.4027
75 N A 0.1787
76 A A 0.1357
77 C A -0.3803
78 H A -0.6558
79 L A -0.6465
80 S A -1.1739
81 C A 0.0000
82 S A -0.8425
83 A A -0.8987
84 L A 0.0000
85 L A -1.9360
86 Q A -2.9200
87 D A -3.3705
88 N A -2.7552
89 I A 0.0000
90 A A -1.1751
91 D A -1.1549
92 A A 0.0000
93 V A 0.0000
94 A A -0.6348
95 C A 0.0000
96 A A 0.0000
97 K A -1.7997
98 R A -2.2072
99 V A 0.0000
100 V A 0.0000
101 R A -3.2040
102 D A -2.1599
103 P A -1.6950
104 Q A -2.2911
105 G A -2.3823
106 I A -1.8094
107 R A -2.4535
108 A A -1.1842
109 W A 0.0000
110 V A -0.2005
111 A A -1.0108
112 W A -1.9350
113 R A -3.1464
114 N A -2.9429
115 R A -3.3548
116 C A 0.0000
117 Q A -3.5014
118 N A -3.3838
119 R A -4.1597
120 D A -4.0378
121 V A -3.0684
122 R A -3.4091
123 Q A -2.8265
124 Y A -1.8104
125 V A -1.5347
126 Q A -2.1596
127 G A -1.1901
128 C A 0.0000
129 G A -0.5525
130 V A -0.5369
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Laboratory of Theory of Biopolymers 2018