Project name: Mb5-11_I18L_I104L_LRLDLL_NegativeControl_CoreCharge

Status: done

Started: 2026-07-06 07:10:45
Settings
Chain sequence(s) A: MQANSGSLEVVEASPTSLQLSWDAFHRYHNGFTHPVRYYRRTYGETGGNSPVQEFTVPGSKSTATLSGLKPGVDYTDTVYAVTWYPRYGYGESGPLSLNYRTELDKPSQ
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:55)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:56)
Show buried residues

Minimal score value
-2.7107
Maximal score value
1.4911
Average score
-0.7115
Total score value
-77.556

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.4206
2 Q A -0.8242
3 A A -0.9268
4 N A -1.4648
5 S A -1.1467
6 G A 0.0000
7 S A -1.2007
8 L A 0.0000
9 E A -1.8215
10 V A -0.7543
11 V A 0.2948
12 E A -1.3563
13 A A -1.1921
14 S A -1.4868
15 P A -1.7325
16 T A -1.1579
17 S A -1.2082
18 L A 0.0000
19 Q A -1.0478
20 L A 0.0000
21 S A -1.0761
22 W A 0.0000
23 D A -2.1957
24 A A -1.4292
25 F A 0.0000
26 H A -0.9338
27 R A 0.0000
28 Y A 0.9718
29 H A 0.2554
30 N A -0.5927
31 G A 0.1056
32 F A 1.4911
33 T A 0.7608
34 H A 0.0458
35 P A -0.4051
36 V A -1.0243
37 R A -1.4193
38 Y A -0.9320
39 Y A 0.0000
40 R A -0.9031
41 R A 0.0000
42 T A -0.6766
43 Y A -0.3475
44 G A -0.6295
45 E A -1.3592
46 T A -1.1046
47 G A -1.1554
48 G A -1.2442
49 N A -1.4998
50 S A -0.8924
51 P A -0.3981
52 V A 0.3093
53 Q A -1.2043
54 E A -1.8271
55 F A -0.7467
56 T A -0.2677
57 V A 0.0000
58 P A -1.0644
59 G A -1.3232
60 S A -1.3754
61 K A -1.9748
62 S A -1.3098
63 T A -0.9334
64 A A -0.3150
65 T A -0.4331
66 L A 0.0000
67 S A -0.8123
68 G A -0.9920
69 L A 0.0000
70 K A -2.3826
71 P A -1.9364
72 G A -1.1563
73 V A -1.1323
74 D A -2.0166
75 Y A 0.0000
76 T A -0.7018
77 D A 0.0000
78 T A 0.0000
79 V A 0.0000
80 Y A -0.3579
81 A A 0.0000
82 V A 0.0000
83 T A 0.0000
84 W A 0.5175
85 Y A 0.0000
86 P A -0.4563
87 R A -1.1010
88 Y A 0.7155
89 G A 0.7061
90 Y A 1.0831
91 G A 0.2658
92 E A -0.8439
93 S A 0.0000
94 G A -0.7855
95 P A -0.4740
96 L A -0.2317
97 S A -0.4865
98 L A -0.5879
99 N A -1.6425
100 Y A -1.4413
101 R A -2.3640
102 T A 0.0000
103 E A -1.9188
104 L A -1.0001
105 D A -2.5716
106 K A -2.7107
107 P A -1.7855
108 S A -1.6362
109 Q A -1.6594
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018