Project name: sod

Status: done

Started: 2025-07-20 00:31:14
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Chain sequence(s) A: ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGIAQ
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:53)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:53)
Show buried residues

Minimal score value
-3.7315
Maximal score value
1.8928
Average score
-0.9063
Total score value
-138.661

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A -1.4693
2 T A -0.9554
3 K A -0.6325
4 A A 0.0000
5 V A 1.4888
6 C A 0.0000
7 V A 1.7355
8 L A 0.0000
9 K A -2.1584
10 G A -2.4464
11 D A -2.6527
12 G A -1.8802
13 P A -1.7663
14 V A 0.0000
15 Q A -2.1197
16 G A -0.3731
17 I A 1.8928
18 I A 0.0000
19 N A 0.2450
20 F A 0.0000
21 E A -1.6888
22 Q A 0.0000
23 K A -3.1152
24 E A -3.2193
25 S A -2.2443
26 N A -2.4691
27 G A -2.1133
28 P A -1.9670
29 V A 0.0000
30 K A -2.1205
31 V A 0.0000
32 W A -0.4602
33 G A 0.0746
34 S A -0.7817
35 I A 0.0000
36 K A -2.6297
37 G A -1.9806
38 L A 0.0000
39 T A -2.2000
40 E A -3.0214
41 G A -1.2535
42 L A -0.0346
43 H A 0.0000
44 G A 0.0000
45 F A 0.0000
46 H A 0.0000
47 V A 0.0000
48 H A 0.0000
49 E A -0.0405
50 F A 0.6951
51 G A -0.2376
52 D A -1.0624
53 N A -1.4599
54 T A -1.0086
55 A A -0.6786
56 G A -1.4959
57 C A -0.9777
58 T A -0.4781
59 S A -0.5537
60 A A 0.0000
61 G A -0.1523
62 P A -0.2916
63 H A 0.0000
64 F A 0.0000
65 N A -0.8016
66 P A -0.5491
67 L A -0.3169
68 S A -1.0583
69 R A -2.6153
70 K A -3.1176
71 H A 0.0000
72 G A 0.0000
73 G A 0.0000
74 P A -1.7463
75 K A -2.7044
76 D A -3.1381
77 E A -3.6550
78 E A -3.6099
79 R A 0.0000
80 H A 0.0000
81 V A 0.0000
82 G A 0.0000
83 D A 0.0000
84 L A 0.0000
85 G A 0.0000
86 N A -0.0490
87 V A 0.0000
88 T A -0.8775
89 A A 0.0000
90 D A -3.4840
91 K A -3.7315
92 D A -3.6119
93 G A 0.0000
94 V A -2.7991
95 A A 0.0000
96 D A -2.1873
97 V A 0.0000
98 S A -1.0057
99 I A -1.0723
100 E A -2.1472
101 D A 0.0000
102 S A -0.9038
103 V A -0.4729
104 I A 0.0000
105 S A 0.0000
106 L A 0.0000
107 S A -1.1967
108 G A -1.6713
109 D A -2.2526
110 H A -1.1681
111 C A -0.8038
112 I A 0.0000
113 I A 0.7748
114 G A 0.2437
115 R A -0.0566
116 T A 0.0000
117 L A 0.0000
118 V A 0.0000
119 V A 0.0000
120 H A 0.0000
121 E A -1.9070
122 K A -1.9072
123 A A -0.6806
124 D A 0.0000
125 D A -1.2058
126 L A -0.9428
127 G A -2.3570
128 K A -2.2079
129 G A -2.2806
130 G A -2.2115
131 N A -2.9804
132 E A -3.3484
133 E A -3.1777
134 S A 0.0000
135 T A -3.0888
136 K A -3.0548
137 T A -1.6980
138 G A 0.0000
139 N A -2.0319
140 A A 0.0000
141 G A -1.4042
142 S A -1.1541
143 R A -1.1672
144 L A -1.4847
145 A A 0.0000
146 C A 0.0000
147 G A 0.0384
148 V A 1.0184
149 I A 0.0000
150 G A 1.1424
151 I A 1.8243
152 A A 0.2659
153 Q A -0.8162
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Laboratory of Theory of Biopolymers 2018