Project name: query_structure

Status: done

Started: 2025-11-29 10:06:53
Settings
Chain sequence(s) A: GIPCGESCVFIPCTVTALLGCSCKDKVCYKN
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:29)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:30)
Show buried residues

Minimal score value
-2.8672
Maximal score value
2.862
Average score
0.2609
Total score value
8.0871

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.4412
2 I A 1.1525
3 P A 0.2117
4 C A 0.5338
5 G A -0.0300
6 E A 0.1345
7 S A 0.0394
8 C A 0.5929
9 V A 1.3849
10 F A 2.8620
11 I A 2.6750
12 P A 1.3376
13 C A 0.0000
14 T A 1.4320
15 V A 2.3910
16 T A 0.0000
17 A A 1.5149
18 L A 2.4910
19 L A 2.0420
20 G A 0.4902
21 C A 0.0000
22 S A -0.5289
23 C A -0.7993
24 K A -2.4782
25 D A -2.8672
26 K A -1.9408
27 V A -1.1420
28 C A 0.0000
29 Y A -0.7061
30 K A -0.8138
31 N A -1.4508
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018