Project name: 98cd2541c2dd3a1

Status: done

Started: 2025-12-30 21:38:59
Settings
Chain sequence(s) A: SGLQQYLKATTNCQVTNAQIQALATKITSGKTSAYDKAVAIFNWVRDNISYSFYYNTKRGAVGTLNAKSGNCVDTTHLLIALSRAAGIPARYRHGTCKFTSGNTYGHVWAQIWVDGKWYAADATSSRNSFGVINNWNTATYTLKGTYASLSF
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:06)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:07)
Show buried residues

Minimal score value
-2.6848
Maximal score value
2.3518
Average score
-0.5479
Total score value
-83.2835

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 S A -0.8286
2 G A -0.9121
3 L A -0.8316
4 Q A -1.7635
5 Q A -1.8960
6 Y A -1.0027
7 L A -0.9798
8 K A -2.0174
9 A A -1.0439
10 T A -0.6978
11 T A -0.3057
12 N A -0.7576
13 C A 0.0000
14 Q A -0.8399
15 V A 0.0000
16 T A -0.7929
17 N A -0.8087
18 A A -0.6770
19 Q A -1.1085
20 I A 0.0000
21 Q A -1.1031
22 A A -0.8891
23 L A -0.7310
24 A A 0.0000
25 T A -1.2074
26 K A -1.7665
27 I A -0.8184
28 T A -1.2266
29 S A -1.2370
30 G A -1.3756
31 K A -1.5274
32 T A -0.9365
33 S A -1.0356
34 A A -0.8196
35 Y A -0.6890
36 D A -1.6297
37 K A -1.1456
38 A A 0.0000
39 V A -0.1562
40 A A -0.3990
41 I A 0.0000
42 F A 0.0000
43 N A -0.9133
44 W A -0.7373
45 V A 0.0000
46 R A -1.6715
47 D A -2.4295
48 N A -1.9965
49 I A 0.0000
50 S A -0.5495
51 Y A 0.8600
52 S A 1.2888
53 F A 2.3518
54 Y A 1.3979
55 Y A 1.0597
56 N A -0.6528
57 T A -1.3521
58 K A -2.4406
59 R A -2.6848
60 G A 0.0000
61 A A 0.0000
62 V A -0.9103
63 G A -1.5304
64 T A 0.0000
65 L A 0.0000
66 N A -1.8988
67 A A -1.4502
68 K A -1.8083
69 S A -0.8368
70 G A 0.0000
71 N A 0.0000
72 C A 0.0000
73 V A 0.0000
74 D A 0.0000
75 T A 0.0000
76 T A 0.0000
77 H A 0.0000
78 L A 0.0000
79 L A 0.0000
80 I A 0.0000
81 A A 0.0000
82 L A 0.0000
83 S A 0.0000
84 R A 0.0000
85 A A -0.5256
86 A A -0.2674
87 G A -0.5460
88 I A 0.0000
89 P A -0.3787
90 A A 0.0000
91 R A -0.2138
92 Y A 0.0000
93 R A -0.3535
94 H A 0.0000
95 G A 0.0000
96 T A -0.2850
97 C A 0.0000
98 K A -1.7415
99 F A -1.1918
100 T A -1.0757
101 S A -0.9291
102 G A -1.3155
103 N A -1.4625
104 T A -0.8679
105 Y A 0.0107
106 G A -0.3191
107 H A 0.0000
108 V A 0.0000
109 W A 0.0000
110 A A 0.0000
111 Q A -0.2342
112 I A 0.0000
113 W A -0.5196
114 V A 0.0000
115 D A -2.2656
116 G A -2.0060
117 K A -2.1497
118 W A -0.8127
119 Y A -0.0639
120 A A 0.4073
121 A A 0.0000
122 D A 0.0000
123 A A 0.0000
124 T A -0.4138
125 S A -1.0261
126 S A -1.6544
127 R A -1.8250
128 N A 0.0000
129 S A -0.1793
130 F A 0.0000
131 G A 0.7103
132 V A 1.1284
133 I A 0.0160
134 N A -1.0131
135 N A -1.0740
136 W A 0.0000
137 N A -1.4249
138 T A -0.5294
139 A A -0.3891
140 T A -0.3317
141 Y A -0.1757
142 T A -0.0780
143 L A 0.1116
144 K A -1.2794
145 G A -0.5756
146 T A -0.2096
147 Y A -0.0944
148 A A -0.4729
149 S A -0.4137
150 L A 0.0000
151 S A -0.1234
152 F A 0.0020
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018