| Chain sequence(s) |
A: AMHVAQPAVVLASSRGIASFVCEYAAGCKNFFWKTFTSCATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLGIGNGTQIYV
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:45)
[INFO] Main: Simulation completed successfully. (00:01:46)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | A | A | 0.5807 | |
| 2 | M | A | 0.2027 | |
| 3 | H | A | -0.8006 | |
| 4 | V | A | 0.0000 | |
| 5 | A | A | -0.6688 | |
| 6 | Q | A | -0.3021 | |
| 7 | P | A | 0.1247 | |
| 8 | A | A | 0.4038 | |
| 9 | V | A | 1.7767 | |
| 10 | V | A | 1.7120 | |
| 11 | L | A | 2.3576 | |
| 12 | A | A | 0.9150 | |
| 13 | S | A | -0.0696 | |
| 14 | S | A | -0.8713 | |
| 15 | R | A | -2.0990 | |
| 16 | G | A | 0.0000 | |
| 17 | I | A | -0.3334 | |
| 18 | A | A | 0.0000 | |
| 19 | S | A | -0.0420 | |
| 20 | F | A | 0.0000 | |
| 21 | V | A | -0.3354 | |
| 22 | C | A | 0.0000 | |
| 23 | E | A | -1.5923 | |
| 24 | Y | A | 0.0000 | |
| 25 | A | A | -0.8670 | |
| 26 | A | A | -0.7643 | |
| 27 | G | A | -0.4550 | |
| 28 | C | A | -0.1961 | |
| 29 | K | A | -1.1397 | |
| 30 | N | A | 0.2391 | |
| 31 | F | A | 2.1612 | |
| 32 | F | A | 2.7581 | |
| 33 | W | A | 1.9547 | |
| 34 | K | A | 0.1923 | |
| 35 | T | A | 1.0536 | |
| 36 | F | A | 2.0161 | |
| 37 | T | A | 0.7249 | |
| 38 | S | A | 0.3506 | |
| 39 | C | A | 0.2781 | |
| 40 | A | A | 0.7041 | |
| 41 | T | A | 0.2330 | |
| 42 | E | A | -0.1014 | |
| 43 | V | A | 0.0000 | |
| 44 | R | A | -0.7453 | |
| 45 | V | A | 0.0000 | |
| 46 | T | A | 0.0000 | |
| 47 | V | A | 0.0000 | |
| 48 | L | A | -0.5435 | |
| 49 | R | A | -0.7651 | |
| 50 | Q | A | -1.2460 | |
| 51 | A | A | -1.1977 | |
| 52 | D | A | -2.2293 | |
| 53 | S | A | -1.5922 | |
| 54 | Q | A | -1.7419 | |
| 55 | V | A | -0.5867 | |
| 56 | T | A | -0.9279 | |
| 57 | E | A | -1.7167 | |
| 58 | V | A | -0.7644 | |
| 59 | C | A | 0.0000 | |
| 60 | A | A | -0.4685 | |
| 61 | A | A | 0.0000 | |
| 62 | T | A | -0.3226 | |
| 63 | Y | A | 0.0000 | |
| 64 | M | A | -0.4789 | |
| 65 | M | A | -0.7466 | |
| 66 | G | A | -1.4713 | |
| 67 | N | A | -2.3279 | |
| 68 | E | A | -2.5147 | |
| 69 | L | A | 0.0000 | |
| 70 | T | A | -0.5106 | |
| 71 | F | A | -0.1535 | |
| 72 | L | A | 0.3563 | |
| 73 | D | A | -1.7418 | |
| 74 | D | A | -2.1922 | |
| 75 | S | A | -1.1699 | |
| 76 | I | A | -0.5727 | |
| 77 | C | A | 0.0000 | |
| 78 | T | A | -0.6715 | |
| 79 | G | A | -0.7620 | |
| 80 | T | A | -1.3081 | |
| 81 | S | A | -1.5167 | |
| 82 | S | A | -1.5514 | |
| 83 | G | A | -1.1764 | |
| 84 | N | A | -1.1545 | |
| 85 | Q | A | -1.6132 | |
| 86 | V | A | 0.0000 | |
| 87 | N | A | -1.2837 | |
| 88 | L | A | 0.0000 | |
| 89 | T | A | -0.2633 | |
| 90 | I | A | 0.0000 | |
| 91 | Q | A | -0.9669 | |
| 92 | G | A | -1.2438 | |
| 93 | L | A | 0.0000 | |
| 94 | R | A | -1.2416 | |
| 95 | A | A | 0.2278 | |
| 96 | M | A | 0.7673 | |
| 97 | D | A | 0.0000 | |
| 98 | T | A | 0.5773 | |
| 99 | G | A | 0.0186 | |
| 100 | L | A | 0.1910 | |
| 101 | Y | A | 0.0000 | |
| 102 | I | A | 0.0000 | |
| 103 | C | A | 0.0000 | |
| 104 | K | A | -0.2956 | |
| 105 | V | A | 0.0000 | |
| 106 | E | A | 0.4204 | |
| 107 | L | A | 0.0000 | |
| 108 | M | A | 1.0168 | |
| 109 | Y | A | 1.3631 | |
| 110 | P | A | 0.6401 | |
| 111 | P | A | 0.5557 | |
| 112 | P | A | 0.6611 | |
| 113 | Y | A | 1.8364 | |
| 114 | Y | A | 1.6660 | |
| 115 | L | A | 1.0910 | |
| 116 | G | A | 0.0000 | |
| 117 | I | A | 0.7403 | |
| 118 | G | A | 0.0000 | |
| 119 | N | A | -1.1563 | |
| 120 | G | A | 0.0000 | |
| 121 | T | A | 0.0000 | |
| 122 | Q | A | 0.4760 | |
| 123 | I | A | 0.0000 | |
| 124 | Y | A | 1.8484 | |
| 125 | V | A | 1.2559 |