| Chain sequence(s) |
A: EASLTGAGATFPAPVYAKWADTYQKETGNKVNYQGIGSSGGVKQIIANTVDFGASDAPLSDEKLAQEGLFQFPTVIGGVVLAVNIPGLKSGELVLDGKTLGDIYLGKIKKWDDEAIAKLNPGLKLPSQNIAVVRRADGSGTSFVFTSYLAKVNEEWKNNVGTGSTVKWPIGLGGKGNDGIAAFVQRLPGAIGYVEYAYAKQNNLAYTKLISADGKPVSPTEENFANAAKGADWSKTFAQDLTNQKGEDAWPITSTTFILIHKDQKKPEQGTEVLKFFDWAYKTGAKQANDLDYASLPDSVVEQVRAAWKTNIKDSSGKPLY
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:01)
[INFO] Main: Simulation completed successfully. (00:00:02)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | E | A | -2.2805 | |
| 2 | A | A | -1.7300 | |
| 3 | S | A | -1.3836 | |
| 4 | L | A | 0.0000 | |
| 5 | T | A | -0.8148 | |
| 6 | G | A | 0.0000 | |
| 7 | A | A | 0.0000 | |
| 8 | G | A | 0.0000 | |
| 9 | A | A | 0.0000 | |
| 10 | T | A | 0.0000 | |
| 11 | F | A | 0.0000 | |
| 12 | P | A | 0.0000 | |
| 13 | A | A | -0.2136 | |
| 14 | P | A | -0.4138 | |
| 15 | V | A | 0.0000 | |
| 16 | Y | A | 0.0000 | |
| 17 | A | A | -0.9901 | |
| 18 | K | A | -1.3677 | |
| 19 | W | A | 0.0000 | |
| 20 | A | A | -1.7356 | |
| 21 | D | A | -2.8136 | |
| 22 | T | A | -2.3513 | |
| 23 | Y | A | 0.0000 | |
| 24 | Q | A | -3.2864 | |
| 25 | K | A | -3.5120 | |
| 26 | E | A | -3.1666 | |
| 27 | T | A | -2.2814 | |
| 28 | G | A | -2.4882 | |
| 29 | N | A | -2.4228 | |
| 30 | K | A | -2.3478 | |
| 31 | V | A | -1.4306 | |
| 32 | N | A | -1.6893 | |
| 33 | Y | A | -0.7961 | |
| 34 | Q | A | -0.7777 | |
| 35 | G | A | -0.6008 | |
| 36 | I | A | 0.0923 | |
| 37 | G | A | 0.0000 | |
| 38 | S | A | 0.0000 | |
| 39 | S | A | -0.4497 | |
| 40 | G | A | -0.6635 | |
| 41 | G | A | 0.0000 | |
| 42 | V | A | -0.5367 | |
| 43 | K | A | -1.5882 | |
| 44 | Q | A | -0.9680 | |
| 45 | I | A | 0.0000 | |
| 46 | I | A | -0.0908 | |
| 47 | A | A | -0.4079 | |
| 48 | N | A | -0.7577 | |
| 49 | T | A | -0.6131 | |
| 50 | V | A | 0.0000 | |
| 51 | D | A | -0.7854 | |
| 52 | F | A | 0.0000 | |
| 53 | G | A | 0.0000 | |
| 54 | A | A | 0.0000 | |
| 55 | S | A | 0.0000 | |
| 56 | D | A | 0.0000 | |
| 57 | A | A | -0.0704 | |
| 58 | P | A | -0.4249 | |
| 59 | L | A | -0.7299 | |
| 60 | S | A | -1.8874 | |
| 61 | D | A | -3.0168 | |
| 62 | E | A | -3.3677 | |
| 63 | K | A | -2.5855 | |
| 64 | L | A | -1.9711 | |
| 65 | A | A | -2.0409 | |
| 66 | Q | A | -2.3953 | |
| 67 | E | A | -1.3792 | |
| 68 | G | A | -1.4293 | |
| 69 | L | A | 0.0000 | |
| 70 | F | A | -0.5275 | |
| 71 | Q | A | 0.0000 | |
| 72 | F | A | 0.0000 | |
| 73 | P | A | 0.0000 | |
| 74 | T | A | 0.0000 | |
| 75 | V | A | 0.0000 | |
| 76 | I | A | 0.0000 | |
| 77 | G | A | 0.0000 | |
| 78 | G | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | V | A | 0.0000 | |
| 81 | L | A | 0.0000 | |
| 82 | A | A | 0.0000 | |
| 83 | V | A | 0.0000 | |
| 84 | N | A | -1.1064 | |
| 85 | I | A | 0.0000 | |
| 86 | P | A | -0.8162 | |
| 87 | G | A | -1.1226 | |
| 88 | L | A | -1.3833 | |
| 89 | K | A | -2.1333 | |
| 90 | S | A | -1.4482 | |
| 91 | G | A | -1.0599 | |
| 92 | E | A | -1.5016 | |
| 93 | L | A | 0.0000 | |
| 94 | V | A | -0.1625 | |
| 95 | L | A | 0.0000 | |
| 96 | D | A | -0.8845 | |
| 97 | G | A | 0.0000 | |
| 98 | K | A | -2.1656 | |
| 99 | T | A | 0.0000 | |
| 100 | L | A | 0.0000 | |
| 101 | G | A | 0.0000 | |
| 102 | D | A | 0.0000 | |
| 103 | I | A | 0.0000 | |
| 104 | Y | A | 0.0000 | |
| 105 | L | A | -0.4825 | |
| 106 | G | A | -0.8221 | |
| 107 | K | A | -1.5913 | |
| 108 | I | A | 0.0000 | |
| 109 | K | A | -2.7560 | |
| 110 | K | A | -2.5942 | |
| 111 | W | A | 0.0000 | |
| 112 | D | A | -2.1656 | |
| 113 | D | A | -2.2592 | |
| 114 | E | A | -2.5465 | |
| 115 | A | A | -1.6862 | |
| 116 | I | A | 0.0000 | |
| 117 | A | A | -1.8884 | |
| 118 | K | A | -2.2614 | |
| 119 | L | A | -0.8778 | |
| 120 | N | A | 0.0000 | |
| 121 | P | A | -1.0789 | |
| 122 | G | A | -1.0714 | |
| 123 | L | A | -1.1222 | |
| 124 | K | A | -1.7598 | |
| 125 | L | A | -1.1165 | |
| 126 | P | A | -1.1037 | |
| 127 | S | A | -1.3948 | |
| 128 | Q | A | -1.6288 | |
| 129 | N | A | -2.2672 | |
| 130 | I | A | -1.3787 | |
| 131 | A | A | -0.2984 | |
| 132 | V | A | 0.0000 | |
| 133 | V | A | 0.0000 | |
| 134 | R | A | -0.2360 | |
| 135 | R | A | 0.0000 | |
| 136 | A | A | -0.6101 | |
| 137 | D | A | -0.7760 | |
| 138 | G | A | -0.2933 | |
| 139 | S | A | 0.0000 | |
| 140 | G | A | 0.0000 | |
| 141 | T | A | 0.0000 | |
| 142 | S | A | 0.0000 | |
| 143 | F | A | 0.5034 | |
| 144 | V | A | 0.0000 | |
| 145 | F | A | 0.0000 | |
| 146 | T | A | 0.0000 | |
| 147 | S | A | -0.5785 | |
| 148 | Y | A | 0.0000 | |
| 149 | L | A | 0.0000 | |
| 150 | A | A | -2.1038 | |
| 151 | K | A | -1.9012 | |
| 152 | V | A | -1.5428 | |
| 153 | N | A | 0.0000 | |
| 154 | E | A | -3.5765 | |
| 155 | E | A | -2.9815 | |
| 156 | W | A | 0.0000 | |
| 157 | K | A | -3.2036 | |
| 158 | N | A | -3.1803 | |
| 159 | N | A | -2.8276 | |
| 160 | V | A | -1.6007 | |
| 161 | G | A | -1.7523 | |
| 162 | T | A | -0.7051 | |
| 163 | G | A | -0.0552 | |
| 164 | S | A | 0.0828 | |
| 165 | T | A | -0.3303 | |
| 166 | V | A | -0.5600 | |
| 167 | K | A | -1.5875 | |
| 168 | W | A | -0.4634 | |
| 169 | P | A | -0.2454 | |
| 170 | I | A | 0.6807 | |
| 171 | G | A | 0.7961 | |
| 172 | L | A | 1.1699 | |
| 173 | G | A | -0.0619 | |
| 174 | G | A | 0.0000 | |
| 175 | K | A | -2.1258 | |
| 176 | G | A | 0.0000 | |
| 177 | N | A | 0.0000 | |
| 178 | D | A | -2.2129 | |
| 179 | G | A | -1.6852 | |
| 180 | I | A | 0.0000 | |
| 181 | A | A | 0.0000 | |
| 182 | A | A | -1.4408 | |
| 183 | F | A | -1.0655 | |
| 184 | V | A | 0.0000 | |
| 185 | Q | A | -2.2903 | |
| 186 | R | A | -2.2838 | |
| 187 | L | A | -0.9966 | |
| 188 | P | A | -1.0646 | |
| 189 | G | A | 0.0000 | |
| 190 | A | A | 0.0000 | |
| 191 | I | A | 0.0000 | |
| 192 | G | A | 0.0000 | |
| 193 | Y | A | 0.0000 | |
| 194 | V | A | 0.0000 | |
| 195 | E | A | 0.0000 | |
| 196 | Y | A | 0.0000 | |
| 197 | A | A | 0.0000 | |
| 198 | Y | A | -1.2970 | |
| 199 | A | A | 0.0000 | |
| 200 | K | A | -2.1102 | |
| 201 | Q | A | -2.2594 | |
| 202 | N | A | -2.4357 | |
| 203 | N | A | -2.3884 | |
| 204 | L | A | 0.0000 | |
| 205 | A | A | -1.2410 | |
| 206 | Y | A | -0.6620 | |
| 207 | T | A | 0.0000 | |
| 208 | K | A | -0.7823 | |
| 209 | L | A | 0.0000 | |
| 210 | I | A | -1.0040 | |
| 211 | S | A | 0.0000 | |
| 212 | A | A | -2.2843 | |
| 213 | D | A | -3.3384 | |
| 214 | G | A | -2.3108 | |
| 215 | K | A | -2.8891 | |
| 216 | P | A | -1.4467 | |
| 217 | V | A | 0.0000 | |
| 218 | S | A | -0.9644 | |
| 219 | P | A | 0.0000 | |
| 220 | T | A | -1.0744 | |
| 221 | E | A | -1.7571 | |
| 222 | E | A | -2.4622 | |
| 223 | N | A | -1.9328 | |
| 224 | F | A | 0.0000 | |
| 225 | A | A | -1.5653 | |
| 226 | N | A | -2.4463 | |
| 227 | A | A | 0.0000 | |
| 228 | A | A | 0.0000 | |
| 229 | K | A | -2.4431 | |
| 230 | G | A | -1.9657 | |
| 231 | A | A | -1.9100 | |
| 232 | D | A | -2.1543 | |
| 233 | W | A | 0.0000 | |
| 234 | S | A | -1.4894 | |
| 235 | K | A | -2.1561 | |
| 236 | T | A | -1.2944 | |
| 237 | F | A | -0.6469 | |
| 238 | A | A | -0.9597 | |
| 239 | Q | A | -1.4054 | |
| 240 | D | A | -1.9545 | |
| 241 | L | A | 0.0000 | |
| 242 | T | A | 0.0000 | |
| 243 | N | A | -1.5051 | |
| 244 | Q | A | -2.5448 | |
| 245 | K | A | -3.4050 | |
| 246 | G | A | -3.3263 | |
| 247 | E | A | -3.6178 | |
| 248 | D | A | -3.4038 | |
| 249 | A | A | 0.0000 | |
| 250 | W | A | 0.0000 | |
| 251 | P | A | 0.0000 | |
| 252 | I | A | 0.0000 | |
| 253 | T | A | 0.0000 | |
| 254 | S | A | 0.0000 | |
| 255 | T | A | 0.0000 | |
| 256 | T | A | 0.0000 | |
| 257 | F | A | 0.0000 | |
| 258 | I | A | 0.0000 | |
| 259 | L | A | 0.0000 | |
| 260 | I | A | 0.0000 | |
| 261 | H | A | -1.4496 | |
| 262 | K | A | -2.0922 | |
| 263 | D | A | -3.4823 | |
| 264 | Q | A | -3.3658 | |
| 265 | K | A | -3.4466 | |
| 266 | K | A | -3.1990 | |
| 267 | P | A | -2.8814 | |
| 268 | E | A | -2.6946 | |
| 269 | Q | A | -2.0660 | |
| 270 | G | A | 0.0000 | |
| 271 | T | A | -1.2651 | |
| 272 | E | A | -1.4818 | |
| 273 | V | A | 0.0000 | |
| 274 | L | A | 0.0000 | |
| 275 | K | A | -1.0264 | |
| 276 | F | A | 0.0000 | |
| 277 | F | A | 0.0000 | |
| 278 | D | A | 0.0000 | |
| 279 | W | A | -0.7073 | |
| 280 | A | A | 0.0000 | |
| 281 | Y | A | -1.1743 | |
| 282 | K | A | -1.7905 | |
| 283 | T | A | -1.1404 | |
| 284 | G | A | 0.0000 | |
| 285 | A | A | -1.6038 | |
| 286 | K | A | -2.5145 | |
| 287 | Q | A | -2.0225 | |
| 288 | A | A | 0.0000 | |
| 289 | N | A | -2.5068 | |
| 290 | D | A | -2.6078 | |
| 291 | L | A | -1.7393 | |
| 292 | D | A | -1.6967 | |
| 293 | Y | A | 0.0000 | |
| 294 | A | A | 0.0000 | |
| 295 | S | A | -0.9666 | |
| 296 | L | A | 0.0000 | |
| 297 | P | A | -1.5200 | |
| 298 | D | A | -2.6344 | |
| 299 | S | A | -1.8480 | |
| 300 | V | A | 0.0000 | |
| 301 | V | A | 0.0000 | |
| 302 | E | A | -2.4333 | |
| 303 | Q | A | -1.5456 | |
| 304 | V | A | 0.0000 | |
| 305 | R | A | -1.2636 | |
| 306 | A | A | -1.1415 | |
| 307 | A | A | -0.9456 | |
| 308 | W | A | 0.0000 | |
| 309 | K | A | -1.8710 | |
| 310 | T | A | -1.3094 | |
| 311 | N | A | -1.6225 | |
| 312 | I | A | 0.0000 | |
| 313 | K | A | -2.8684 | |
| 314 | D | A | -3.0737 | |
| 315 | S | A | -2.2757 | |
| 316 | S | A | -1.6844 | |
| 317 | G | A | -2.0776 | |
| 318 | K | A | -2.7187 | |
| 319 | P | A | -1.9923 | |
| 320 | L | A | -1.2706 | |
| 321 | Y | A | -0.5924 |
ALA alanine
ARG arginine
ASN asparagine
ASP aspartic acid
CYS cysteine
GLN glutamine
GLU glutamic acid
GLY glycine
HIS histidine
ILE isoleucine
LEU leucine
LYS lysine
MET methionine
PHE phenylalanine
PRO proline
SER serine
THR threonine
TRP tryptophan
TYR tyrosine
VAL valine