| Chain sequence(s) |
A: GSGHKFF
C: GSGHKFF B: GSGHKFF E: GSGHKFF D: GSGHKFF G: GSGHKFF F: GSGHKFF I: GSGHKFF H: GSGHKFF K: GSGHKFF J: GSGHKFF L: GSGHKFF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:10)
[INFO] Main: Simulation completed successfully. (00:02:13)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.0843 | |
| 2 | S | A | -0.9678 | |
| 3 | G | A | -1.2464 | |
| 4 | H | A | 0.0000 | |
| 5 | K | A | -0.4657 | |
| 6 | F | A | 0.0000 | |
| 7 | F | A | 3.2420 | |
| 1 | G | B | -1.0866 | |
| 2 | S | B | -0.8383 | |
| 3 | G | B | -1.0010 | |
| 4 | H | B | 0.0000 | |
| 5 | K | B | -0.3529 | |
| 6 | F | B | 0.0000 | |
| 7 | F | B | 3.3820 | |
| 1 | G | C | -1.0612 | |
| 2 | S | C | -0.8233 | |
| 3 | G | C | -0.9637 | |
| 4 | H | C | 0.0000 | |
| 5 | K | C | -0.3042 | |
| 6 | F | C | 0.0000 | |
| 7 | F | C | 3.4175 | |
| 1 | G | D | -1.0666 | |
| 2 | S | D | -0.9092 | |
| 3 | G | D | -1.2624 | |
| 4 | H | D | 0.0000 | |
| 5 | K | D | -0.4016 | |
| 6 | F | D | 0.0000 | |
| 7 | F | D | 3.2161 | |
| 1 | G | E | -0.9191 | |
| 2 | S | E | -0.8514 | |
| 3 | G | E | -1.4437 | |
| 4 | H | E | -1.4653 | |
| 5 | K | E | -1.1997 | |
| 6 | F | E | 0.9706 | |
| 7 | F | E | 2.6412 | |
| 1 | G | F | -0.9703 | |
| 2 | S | F | -0.8987 | |
| 3 | G | F | -1.4223 | |
| 4 | H | F | -1.3812 | |
| 5 | K | F | -1.3810 | |
| 6 | F | F | 0.5085 | |
| 7 | F | F | 2.2775 | |
| 1 | G | G | -1.1083 | |
| 2 | S | G | -0.9636 | |
| 3 | G | G | -1.2920 | |
| 4 | H | G | 0.0000 | |
| 5 | K | G | -0.6193 | |
| 6 | F | G | 0.0000 | |
| 7 | F | G | 2.5655 | |
| 1 | G | H | -1.0312 | |
| 2 | S | H | -0.8652 | |
| 3 | G | H | -0.9534 | |
| 4 | H | H | 0.0000 | |
| 5 | K | H | -0.3186 | |
| 6 | F | H | 0.0000 | |
| 7 | F | H | 3.2589 | |
| 1 | G | I | -1.0875 | |
| 2 | S | I | -0.8605 | |
| 3 | G | I | -0.9377 | |
| 4 | H | I | 0.0000 | |
| 5 | K | I | -0.2285 | |
| 6 | F | I | 0.0000 | |
| 7 | F | I | 3.4122 | |
| 1 | G | J | -1.0359 | |
| 2 | S | J | -0.9859 | |
| 3 | G | J | -1.2325 | |
| 4 | H | J | 0.0000 | |
| 5 | K | J | -0.0608 | |
| 6 | F | J | 0.0000 | |
| 7 | F | J | 3.5634 | |
| 1 | G | K | -0.8818 | |
| 2 | S | K | -0.9548 | |
| 3 | G | K | -1.2400 | |
| 4 | H | K | -1.0404 | |
| 5 | K | K | -0.4013 | |
| 6 | F | K | 2.0580 | |
| 7 | F | K | 3.2230 | |
| 1 | G | L | -0.8823 | |
| 2 | S | L | -0.9355 | |
| 3 | G | L | -1.2075 | |
| 4 | H | L | -1.0875 | |
| 5 | K | L | -0.7987 | |
| 6 | F | L | 1.0727 | |
| 7 | F | L | 2.7272 |