Project name: 99787b36659a6c5

Status: done

Started: 2026-05-21 11:35:16
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Chain sequence(s) A: SKGHKGH
C: SKGHKGH
B: SKGHKGH
E: SKGHKGH
D: SKGHKGH
G: SKGHKGH
F: SKGHKGH
I: SKGHKGH
H: SKGHKGH
K: SKGHKGH
J: SKGHKGH
L: SKGHKGH
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:04:05)
[INFO]       Main:     Simulation completed successfully.                                          (00:04:07)
Show buried residues

Minimal score value
-3.1948
Maximal score value
0.0
Average score
-1.5406
Total score value
-129.4093

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 S A -1.7148
2 K A -2.8978
3 G A -2.6412
4 H A -2.6526
5 K A -2.8725
6 G A -1.7158
7 H A -1.8467
1 S B -1.4894
2 K B -2.3134
3 G B 0.0000
4 H B -2.3603
5 K B 0.0000
6 G B -1.6974
7 H B -2.0721
1 S C -0.9944
2 K C -1.6759
3 G C 0.0000
4 H C -1.3759
5 K C 0.0000
6 G C -1.3194
7 H C -1.8788
1 S D -0.9906
2 K D -1.6669
3 G D 0.0000
4 H D -1.2166
5 K D 0.0000
6 G D -1.2206
7 H D -1.8285
1 S E -1.3999
2 K E -2.3386
3 G E 0.0000
4 H E -1.8148
5 K E 0.0000
6 G E -1.6209
7 H E -2.0653
1 S F -1.5296
2 K F -2.8023
3 G F 0.0000
4 H F -2.6245
5 K F -2.5994
6 G F -1.8216
7 H F -1.8553
1 S G -1.7049
2 K G -2.8620
3 G G -2.6531
4 H G -2.8030
5 K G -3.1948
6 G G -2.2567
7 H G -2.0287
1 S H -1.5364
2 K H -2.4247
3 G H 0.0000
4 H H -2.4084
5 K H -2.5007
6 G H -1.9470
7 H H -2.1838
1 S I -1.2045
2 K I -1.9356
3 G I 0.0000
4 H I -1.3761
5 K I -1.6011
6 G I -1.2813
7 H I -1.7061
1 S J -1.1491
2 K J -1.8203
3 G J 0.0000
4 H J -1.2576
5 K J 0.0000
6 G J -1.0178
7 H J -1.5898
1 S K -1.5388
2 K K -2.2661
3 G K 0.0000
4 H K -1.7680
5 K K 0.0000
6 G K -1.2380
7 H K -1.5827
1 S L -1.5420
2 K L -2.8813
3 G L 0.0000
4 H L -2.3836
5 K L -2.1182
6 G L -1.2199
7 H L -1.5134
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Laboratory of Theory of Biopolymers 2018