| Chain sequence(s) |
A: SKGHKGH
C: SKGHKGH B: SKGHKGH E: SKGHKGH D: SKGHKGH G: SKGHKGH F: SKGHKGH I: SKGHKGH H: SKGHKGH K: SKGHKGH J: SKGHKGH L: SKGHKGH input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:04:05)
[INFO] Main: Simulation completed successfully. (00:04:07)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | S | A | -1.7148 | |
| 2 | K | A | -2.8978 | |
| 3 | G | A | -2.6412 | |
| 4 | H | A | -2.6526 | |
| 5 | K | A | -2.8725 | |
| 6 | G | A | -1.7158 | |
| 7 | H | A | -1.8467 | |
| 1 | S | B | -1.4894 | |
| 2 | K | B | -2.3134 | |
| 3 | G | B | 0.0000 | |
| 4 | H | B | -2.3603 | |
| 5 | K | B | 0.0000 | |
| 6 | G | B | -1.6974 | |
| 7 | H | B | -2.0721 | |
| 1 | S | C | -0.9944 | |
| 2 | K | C | -1.6759 | |
| 3 | G | C | 0.0000 | |
| 4 | H | C | -1.3759 | |
| 5 | K | C | 0.0000 | |
| 6 | G | C | -1.3194 | |
| 7 | H | C | -1.8788 | |
| 1 | S | D | -0.9906 | |
| 2 | K | D | -1.6669 | |
| 3 | G | D | 0.0000 | |
| 4 | H | D | -1.2166 | |
| 5 | K | D | 0.0000 | |
| 6 | G | D | -1.2206 | |
| 7 | H | D | -1.8285 | |
| 1 | S | E | -1.3999 | |
| 2 | K | E | -2.3386 | |
| 3 | G | E | 0.0000 | |
| 4 | H | E | -1.8148 | |
| 5 | K | E | 0.0000 | |
| 6 | G | E | -1.6209 | |
| 7 | H | E | -2.0653 | |
| 1 | S | F | -1.5296 | |
| 2 | K | F | -2.8023 | |
| 3 | G | F | 0.0000 | |
| 4 | H | F | -2.6245 | |
| 5 | K | F | -2.5994 | |
| 6 | G | F | -1.8216 | |
| 7 | H | F | -1.8553 | |
| 1 | S | G | -1.7049 | |
| 2 | K | G | -2.8620 | |
| 3 | G | G | -2.6531 | |
| 4 | H | G | -2.8030 | |
| 5 | K | G | -3.1948 | |
| 6 | G | G | -2.2567 | |
| 7 | H | G | -2.0287 | |
| 1 | S | H | -1.5364 | |
| 2 | K | H | -2.4247 | |
| 3 | G | H | 0.0000 | |
| 4 | H | H | -2.4084 | |
| 5 | K | H | -2.5007 | |
| 6 | G | H | -1.9470 | |
| 7 | H | H | -2.1838 | |
| 1 | S | I | -1.2045 | |
| 2 | K | I | -1.9356 | |
| 3 | G | I | 0.0000 | |
| 4 | H | I | -1.3761 | |
| 5 | K | I | -1.6011 | |
| 6 | G | I | -1.2813 | |
| 7 | H | I | -1.7061 | |
| 1 | S | J | -1.1491 | |
| 2 | K | J | -1.8203 | |
| 3 | G | J | 0.0000 | |
| 4 | H | J | -1.2576 | |
| 5 | K | J | 0.0000 | |
| 6 | G | J | -1.0178 | |
| 7 | H | J | -1.5898 | |
| 1 | S | K | -1.5388 | |
| 2 | K | K | -2.2661 | |
| 3 | G | K | 0.0000 | |
| 4 | H | K | -1.7680 | |
| 5 | K | K | 0.0000 | |
| 6 | G | K | -1.2380 | |
| 7 | H | K | -1.5827 | |
| 1 | S | L | -1.5420 | |
| 2 | K | L | -2.8813 | |
| 3 | G | L | 0.0000 | |
| 4 | H | L | -2.3836 | |
| 5 | K | L | -2.1182 | |
| 6 | G | L | -1.2199 | |
| 7 | H | L | -1.5134 |