Project name: 5SX4

Status: done

Started: 2026-03-29 09:51:32
Settings
Chain sequence(s) H: QVQLQESGPGLVKPSETLSLTCTVSGGSVSSGDYYWTWIRQSPGKGLEWIGHIYYSGNTNYNPSLKSRLTISIDTSKTQFSLKLSSVTAADTAIYYCVRDRVTGAFDIWGQGTMVTVSS
L: DIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYFCQHFDHLPLAFGGGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:16)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:17)
Show buried residues

Minimal score value
-2.5941
Maximal score value
0.8966
Average score
-0.5743
Total score value
-129.7847

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.7571
2 V H 0.0000
3 Q H -2.0990
4 L H 0.0000
5 Q H -1.8951
6 E H 0.0000
7 S H -0.8798
8 G H -0.5374
9 P H -0.1810
11 G H 0.1831
12 L H 0.5522
13 V H 0.0000
14 K H -1.4874
15 P H -1.1384
16 S H -1.1647
17 E H -1.5519
18 T H -1.2331
19 L H 0.0000
20 S H -0.9671
21 L H 0.0000
22 T H -0.6821
23 C H 0.0000
24 T H -1.1614
25 V H 0.0000
26 S H -1.5319
27 G H -1.4810
28 G H -1.1982
29 S H -0.8924
30 V H 0.0000
31 S H -0.3894
34 S H -0.6146
35 G H -0.7286
36 D H -1.3746
37 Y H -0.2263
38 Y H 0.1922
39 W H 0.0000
40 T H 0.0000
41 W H 0.0000
42 I H 0.0000
43 R H 0.0000
44 Q H -0.3320
45 S H -0.5876
46 P H -0.9067
47 G H -1.1675
48 K H -1.5837
49 G H -1.1736
50 L H 0.0000
51 E H -0.6103
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 H H 0.0000
56 I H 0.0000
57 Y H -0.0413
58 Y H 0.0832
59 S H -0.3725
63 G H -0.8422
64 N H -1.3095
65 T H -0.5947
66 N H -0.3225
67 Y H -0.2815
68 N H -0.6275
69 P H -0.8899
70 S H -0.8290
71 L H 0.0000
72 K H -1.9803
74 S H -1.2761
75 R H -1.3189
76 L H 0.0000
77 T H -0.9897
78 I H 0.0000
79 S H -0.5550
80 I H -0.4971
81 D H -1.2003
82 T H -0.9558
83 S H -1.3065
84 K H -2.1072
85 T H -1.3230
86 Q H -1.2635
87 F H 0.0000
88 S H -0.6173
89 L H 0.0000
90 K H -1.5597
91 L H 0.0000
92 S H -1.0294
93 S H -0.9177
94 V H 0.0000
95 T H -0.4960
96 A H -0.1926
97 A H -0.1594
98 D H 0.0000
99 T H 0.2339
100 A H 0.0000
101 I H 0.7154
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 V H 0.0000
106 R H 0.0000
107 D H 0.0000
108 R H -0.1514
109 V H 0.5324
110 T H 0.2233
113 G H 0.0000
114 A H 0.0000
115 F H 0.0000
116 D H -0.3490
117 I H 0.0000
118 W H -0.7686
119 G H 0.0000
120 Q H -2.0118
121 G H -0.8275
122 T H -0.1322
123 M H 0.8966
124 V H 0.0000
125 T H 0.2706
126 V H 0.0000
127 S H -0.4550
128 S H -0.5992
1 D L -2.1861
2 I L 0.0000
3 Q L -2.0166
4 M L 0.0000
5 T L -1.1024
6 Q L -0.8251
7 S L -0.6780
8 P L -0.5692
9 S L -0.7469
10 S L -0.9687
11 L L -0.7940
12 S L -0.9599
13 A L -1.0996
14 S L -0.8031
15 V L 0.0586
16 G L -0.5685
17 D L -1.6869
18 R L -2.3218
19 V L 0.0000
20 T L -0.6302
21 I L 0.0000
22 T L -0.6346
23 C L 0.0000
24 Q L -2.0295
25 A L 0.0000
26 S L -1.8671
27 Q L -2.3113
28 D L -2.5316
29 I L 0.0000
36 S L -1.0939
37 N L -0.9217
38 Y L -0.0138
39 L L 0.0000
40 N L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L -0.8372
44 Q L -1.2831
45 K L -1.6733
46 P L -1.1821
47 G L -1.6934
48 K L -2.5941
49 A L -1.5746
50 P L 0.0000
51 K L -1.2509
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.1441
56 D L -0.5884
57 A L 0.0000
65 S L -0.7160
66 N L -0.7327
67 L L 0.1129
68 E L 0.0000
69 T L -0.2090
70 G L -0.3676
71 V L -0.1685
72 P L -0.2747
74 S L -0.3765
75 R L -0.8367
76 F L 0.0000
77 S L -0.4110
78 G L -0.4171
79 S L -0.8243
80 G L -1.0674
83 S L -1.2678
84 G L -1.5578
85 T L -1.9502
86 D L -2.0131
87 F L 0.0000
88 T L -0.6058
89 F L 0.0000
90 T L 0.0000
91 I L 0.0000
92 S L -1.4059
93 S L -1.1707
94 L L 0.0000
95 Q L -0.7731
96 P L -0.8965
97 E L -1.5092
98 D L 0.0000
99 I L -0.4930
100 A L 0.0000
101 T L -0.8434
102 Y L 0.0000
103 F L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 H L 0.0000
107 F L 0.3011
108 D L -0.7502
109 H L -0.7099
114 L L 0.3798
115 P L -0.0691
116 L L 0.0000
117 A L -0.5929
118 F L 0.0000
119 G L 0.0000
120 G L -1.0240
121 G L 0.0000
122 T L 0.0000
123 K L -1.4703
124 V L 0.0000
125 E L -1.6431
126 I L -0.8824
127 K L -1.6237
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Laboratory of Theory of Biopolymers 2018