Project name: 998bca24a350c64

Status: done

Started: 2025-06-02 14:13:15
Settings
Chain sequence(s) H: QVQLVQSGAEVKKPGASVKVSCKTSGFTFSSTYISWVRQAPGQSLEWMGWIYAGTGGTRYNQKFQGRVTITVDTSASTAYMELSSLRSEDTAVYYCARRDPIPYFDVWGQGTTVTVSS
L: EIVMTQSPATLSLSPGERATLSCRASENVGAYVSWYQQKPGQAPRLLIYGASNRYTGVPDRFSGSGSGTDFTLTISSLQPEDLADYHCGQSYSFPFTFGQGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:07)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:09)
Show buried residues

Minimal score value
-2.7497
Maximal score value
1.4735
Average score
-0.565
Total score value
-127.1284

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.2240
2 V H -0.4445
3 Q H -0.8082
4 L H 0.0000
5 V H 0.7154
6 Q H 0.0000
7 S H -0.5355
8 G H -0.5422
9 A H -0.0436
11 E H -0.0944
12 V H 0.9192
13 K H -0.8862
14 K H -2.1344
15 P H -2.1641
16 G H -1.4918
17 A H -1.2021
18 S H -1.3361
19 V H 0.0000
20 K H -2.0286
21 V H 0.0000
22 S H -0.5398
23 C H 0.0000
24 K H -0.9493
25 T H 0.0000
26 S H -0.6259
27 G H -0.7198
28 F H -0.1050
29 T H -0.0705
30 F H 0.0000
35 S H -0.3327
36 S H -0.2581
37 T H 0.0000
38 Y H 0.1538
39 I H 0.0000
40 S H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.5493
45 A H -0.9713
46 P H -0.9933
47 G H -1.1930
48 Q H -1.7972
49 S H -1.2673
50 L H 0.0000
51 E H -0.8361
52 W H 0.0000
53 M H 0.0000
54 G H 0.0000
55 W H -0.0732
56 I H 0.0000
57 Y H 0.0255
58 A H 0.0000
59 G H -0.4917
62 T H -0.3283
63 G H -0.3963
64 G H -0.4714
65 T H -0.4798
66 R H -0.9529
67 Y H -1.0897
68 N H -1.4876
69 Q H -2.4743
70 K H -2.7497
71 F H 0.0000
72 Q H -2.5089
74 G H -1.5883
75 R H -1.2316
76 V H 0.0000
77 T H -0.8238
78 I H 0.0000
79 T H -0.1164
80 V H -0.3093
81 D H -0.8466
82 T H -0.5651
83 S H -0.4363
84 A H -0.5877
85 S H -0.6511
86 T H 0.0000
87 A H 0.0000
88 Y H -0.5962
89 M H 0.0000
90 E H -1.3763
91 L H 0.0000
92 S H -1.0735
93 S H -1.1482
94 L H 0.0000
95 R H -2.7195
96 S H -2.1917
97 E H -2.4529
98 D H 0.0000
99 T H -0.7978
100 A H 0.0000
101 V H 0.2331
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H -0.1591
107 R H 0.0000
108 D H 0.0987
109 P H 0.3387
110 I H 1.4735
113 P H 0.9531
114 Y H 0.5553
115 F H 0.0000
116 D H -0.0874
117 V H -0.1263
118 W H 0.0000
119 G H 0.0000
120 Q H -1.1765
121 G H -0.5655
122 T H 0.0000
123 T H 0.0399
124 V H 0.0000
125 T H -0.2662
126 V H 0.0000
127 S H -1.1199
128 S H -0.9504
1 E L -1.4471
2 I L 0.0000
3 V L 0.5169
4 M L 0.0000
5 T L -0.6973
6 Q L 0.0000
7 S L -0.7635
8 P L -0.3474
9 A L -0.5191
10 T L -0.6326
11 L L -0.4855
12 S L -0.7082
13 L L -1.0892
14 S L -1.4660
15 P L -1.6177
16 G L -1.4249
17 E L -2.0894
18 R L -2.4506
19 A L 0.0000
20 T L -0.6508
21 L L 0.0000
22 S L -0.8939
23 C L 0.0000
24 R L -2.5651
25 A L 0.0000
26 S L -1.5572
27 E L -2.5600
28 N L -2.3356
29 V L 0.0000
36 G L -0.5058
37 A L -0.0656
38 Y L 1.1094
39 V L 0.0000
40 S L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.4881
46 P L -1.0300
47 G L -1.4458
48 Q L -2.0436
49 A L -1.2650
50 P L 0.0000
51 R L -0.9513
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.2417
56 G L 0.0618
57 A L 0.0000
65 S L -0.7741
66 N L -1.1620
67 R L -1.4432
68 Y L -0.4804
69 T L -0.4601
70 G L -0.8090
71 V L 0.0000
72 P L -1.3131
74 D L -2.2261
75 R L -1.6323
76 F L 0.0000
77 S L -1.0311
78 G L -0.6287
79 S L -0.7926
80 G L -1.1117
83 S L -1.0798
84 G L -1.5174
85 T L -2.2483
86 D L -2.2713
87 F L 0.0000
88 T L -0.7976
89 L L 0.0000
90 T L -0.6142
91 I L 0.0000
92 S L -1.5023
93 S L -1.6497
94 L L 0.0000
95 Q L -1.5238
96 P L -1.3758
97 E L -1.7219
98 D L 0.0000
99 L L -0.3271
100 A L 0.0000
101 D L -1.0039
102 Y L 0.0000
103 H L 0.0000
104 C L 0.0000
105 G L 0.0000
106 Q L 0.0000
107 S L 0.0000
108 Y L 1.3296
109 S L 0.6968
114 F L 0.9913
115 P L -0.0446
116 F L 0.0000
117 T L 0.2213
118 F L 0.0000
119 G L 0.0000
120 Q L -1.2613
121 G L -1.0905
122 T L 0.0000
123 K L -1.3587
124 L L 0.0000
125 E L -1.1110
126 I L -0.9681
127 K L -1.7637
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Laboratory of Theory of Biopolymers 2018