| Chain sequence(s) |
A: GGKGHFG
C: GGKGHFG B: GGKGHFG E: GGKGHFG D: GGKGHFG G: GGKGHFG F: GGKGHFG I: GGKGHFG H: GGKGHFG K: GGKGHFG J: GGKGHFG M: GGKGHFG L: GGKGHFG O: GGKGHFG N: GGKGHFG Q: GGKGHFG P: GGKGHFG S: GGKGHFG R: GGKGHFG T: GGKGHFG input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:09:28)
[INFO] Main: Simulation completed successfully. (00:09:34)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.4099 | |
| 2 | G | A | -2.1629 | |
| 3 | K | A | -2.2811 | |
| 4 | G | A | -1.4601 | |
| 5 | H | A | -0.2553 | |
| 6 | F | A | 1.7279 | |
| 7 | G | A | 1.2564 | |
| 1 | G | B | -1.9763 | |
| 2 | G | B | -2.8952 | |
| 3 | K | B | -3.2662 | |
| 4 | G | B | 0.0000 | |
| 5 | H | B | -0.8772 | |
| 6 | F | B | 1.2140 | |
| 7 | G | B | 1.0588 | |
| 1 | G | C | -1.9210 | |
| 2 | G | C | -2.5488 | |
| 3 | K | C | -3.4003 | |
| 4 | G | C | 0.0000 | |
| 5 | H | C | -1.0378 | |
| 6 | F | C | 0.7672 | |
| 7 | G | C | 0.7883 | |
| 1 | G | D | -1.3139 | |
| 2 | G | D | -1.9611 | |
| 3 | K | D | -2.5830 | |
| 4 | G | D | -1.1129 | |
| 5 | H | D | -0.9369 | |
| 6 | F | D | 0.4220 | |
| 7 | G | D | 0.1841 | |
| 1 | G | E | -1.5168 | |
| 2 | G | E | -2.5440 | |
| 3 | K | E | -2.6626 | |
| 4 | G | E | -1.2664 | |
| 5 | H | E | 0.0000 | |
| 6 | F | E | 2.0092 | |
| 7 | G | E | 0.0000 | |
| 1 | G | F | -1.6740 | |
| 2 | G | F | -2.6427 | |
| 3 | K | F | -2.8296 | |
| 4 | G | F | 0.0000 | |
| 5 | H | F | -0.2449 | |
| 6 | F | F | 1.7371 | |
| 7 | G | F | 1.4642 | |
| 1 | G | G | -1.5298 | |
| 2 | G | G | -2.5667 | |
| 3 | K | G | -2.7562 | |
| 4 | G | G | -1.3700 | |
| 5 | H | G | -0.6338 | |
| 6 | F | G | 1.5078 | |
| 7 | G | G | 0.0000 | |
| 1 | G | H | -1.5394 | |
| 2 | G | H | -2.2381 | |
| 3 | K | H | -2.5768 | |
| 4 | G | H | 0.0000 | |
| 5 | H | H | -0.5966 | |
| 6 | F | H | 1.2907 | |
| 7 | G | H | 1.3177 | |
| 1 | G | I | -1.2101 | |
| 2 | G | I | -1.9759 | |
| 3 | K | I | -2.1413 | |
| 4 | G | I | -0.8966 | |
| 5 | H | I | -0.1857 | |
| 6 | F | I | 1.7177 | |
| 7 | G | I | 0.0000 | |
| 1 | G | J | -1.5236 | |
| 2 | G | J | -2.3176 | |
| 3 | K | J | -2.4268 | |
| 4 | G | J | 0.0000 | |
| 5 | H | J | -0.4031 | |
| 6 | F | J | 1.4655 | |
| 7 | G | J | 1.1012 | |
| 1 | G | K | -1.4225 | |
| 2 | G | K | -1.9714 | |
| 3 | K | K | -2.5006 | |
| 4 | G | K | 0.0000 | |
| 5 | H | K | -0.6653 | |
| 6 | F | K | 0.8606 | |
| 7 | G | K | 0.0000 | |
| 1 | G | L | -1.1108 | |
| 2 | G | L | -1.6338 | |
| 3 | K | L | -1.6978 | |
| 4 | G | L | -0.5728 | |
| 5 | H | L | 0.0000 | |
| 6 | F | L | 1.8219 | |
| 7 | G | L | 1.7480 | |
| 1 | G | M | -1.1433 | |
| 2 | G | M | -1.7805 | |
| 3 | K | M | -1.4855 | |
| 4 | G | M | 0.0000 | |
| 5 | H | M | 0.1730 | |
| 6 | F | M | 2.1993 | |
| 7 | G | M | 0.0000 | |
| 1 | G | N | -1.3237 | |
| 2 | G | N | -1.9136 | |
| 3 | K | N | -1.9123 | |
| 4 | G | N | -0.8848 | |
| 5 | H | N | 0.1271 | |
| 6 | F | N | 1.8570 | |
| 7 | G | N | 1.9801 | |
| 1 | G | O | -1.2764 | |
| 2 | G | O | -2.0397 | |
| 3 | K | O | -2.0304 | |
| 4 | G | O | 0.0000 | |
| 5 | H | O | -0.0189 | |
| 6 | F | O | 1.7168 | |
| 7 | G | O | 1.9587 | |
| 1 | G | P | -1.4224 | |
| 2 | G | P | -2.3989 | |
| 3 | K | P | -2.0272 | |
| 4 | G | P | 0.0000 | |
| 5 | H | P | 0.0000 | |
| 6 | F | P | 1.3809 | |
| 7 | G | P | 1.7228 | |
| 1 | G | Q | -1.7583 | |
| 2 | G | Q | -2.8955 | |
| 3 | K | Q | -3.0413 | |
| 4 | G | Q | 0.0000 | |
| 5 | H | Q | -0.9985 | |
| 6 | F | Q | 0.6946 | |
| 7 | G | Q | 1.2036 | |
| 1 | G | R | -2.0353 | |
| 2 | G | R | -3.0026 | |
| 3 | K | R | -3.5719 | |
| 4 | G | R | 0.0000 | |
| 5 | H | R | -1.6570 | |
| 6 | F | R | 0.0015 | |
| 7 | G | R | 0.5995 | |
| 1 | G | S | -1.6754 | |
| 2 | G | S | -2.3385 | |
| 3 | K | S | -3.0746 | |
| 4 | G | S | -1.9925 | |
| 5 | H | S | -1.7785 | |
| 6 | F | S | -0.3595 | |
| 7 | G | S | -0.1134 | |
| 1 | G | T | -1.1693 | |
| 2 | G | T | -1.7186 | |
| 3 | K | T | -2.2899 | |
| 4 | G | T | -1.1076 | |
| 5 | H | T | -0.2086 | |
| 6 | F | T | 1.4074 | |
| 7 | G | T | 1.3611 |