Project name: REST_test

Status: done

Started: 2025-05-31 06:48:49
Settings
Chain sequence(s) A: MDGTRTSLDIEEYSDTEVQKNQVLTLEEWQDKWVNGKTAFHQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGKICNIRCLEKVDAFEERHKSWGIDCLFEKLYLLTEK
input PDB
Selected Chain(s) A
Distance of aggregation 5 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues FV67A
Energy difference between WT (input) and mutated protein (by FoldX) 3.51985 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:03:19)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:03:22)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:05:01)
[INFO]       Main:     Simulation completed successfully.                                          (00:05:02)
Show buried residues

Minimal score value
-2.476
Maximal score value
1.7147
Average score
-0.4324
Total score value
-105.9312

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.7210
2 D A -1.6778
3 G A -0.8015
4 T A -0.4904
5 R A -1.8698
6 T A -0.4435
7 S A 0.0580
8 L A 1.1769
9 D A -1.3758
10 I A 0.0202
11 E A -1.8238
12 E A -0.9705
13 Y A 0.2071
14 S A -0.3688
15 D A -1.2971
16 T A -0.6098
17 E A -1.6558
18 V A 0.6556
19 Q A 0.0000
20 K A -1.6096
21 N A -1.6252
22 Q A -0.4805
23 V A 1.7147
24 L A 0.5745
25 T A 0.1760
26 L A 0.5856
27 E A -1.9030
28 E A -1.8920
29 W A 0.0000
30 Q A -0.6321
31 D A -1.8817
32 K A -0.9422
33 W A 0.0000
34 V A 1.3596
35 N A -1.0361
36 G A -0.9914
37 K A -1.8330
38 T A -0.3061
39 A A 0.1505
40 F A 0.5151
41 H A -0.1107
42 Q A -0.8545
43 E A -2.1257
44 Q A -1.5241
45 G A 0.0000
46 H A 0.0000
47 Q A -1.2716
48 L A 0.0000
49 L A 0.0000
50 K A -1.7707
51 K A -1.9649
52 H A -0.4441
53 L A 0.0000
54 D A -1.7979
55 T A -0.3681
56 F A 0.0000
57 L A 0.0000
58 K A -1.7846
59 G A -0.9123
60 K A -0.8920
61 S A -0.4371
62 G A -0.4774
63 L A -0.0453
64 R A -0.6113
65 V A 0.0000
66 F A 0.0000
67 V A 0.0000 mutated: FV67A
68 P A 0.0000
69 L A 0.2384
70 C A 0.0000
71 G A 0.0000
72 K A -0.2167
73 A A 0.0054
74 V A 0.2055
75 E A 0.0000
76 M A 0.0000
77 K A -0.2949
78 W A 0.0842
79 F A 0.0000
80 A A -0.3461
81 D A -2.1180
82 R A -2.2477
83 G A -0.7972
84 H A 0.0000
85 S A -0.1874
86 V A 0.0000
87 V A 0.0000
88 G A 0.0000
89 V A 0.0000
90 E A 0.0000
91 I A 0.2491
92 S A 0.0000
93 E A -0.7248
94 L A 0.4293
95 G A 0.0000
96 I A 0.0000
97 Q A -1.0461
98 E A -1.5955
99 F A 0.0000
100 F A 0.0000
101 T A -0.5429
102 E A -1.8675
103 Q A -0.7487
104 N A -1.2522
105 L A 0.0372
106 S A -0.0868
107 Y A 0.3047
108 S A -0.4371
109 E A -1.9487
110 E A -1.9625
111 P A -0.6412
112 I A 0.0000
113 T A -0.2992
114 E A -1.2831
115 I A 0.0000
116 P A -0.3390
117 G A -0.5143
118 T A -0.2199
119 K A -0.7275
120 V A 0.0000
121 F A 0.0000
122 K A -0.7011
123 S A 0.0000
124 S A -0.2510
125 S A -0.3340
126 G A -0.5610
127 N A -0.4096
128 I A 0.0000
129 S A 0.0000
130 L A 0.0000
131 Y A 0.1645
132 C A 0.0000
133 C A 0.0000
134 S A -0.0221
135 I A 0.0000
136 F A 0.6380
137 D A -0.3286
138 L A 0.0000
139 P A -0.5439
140 R A -1.8839
141 T A -0.5716
142 N A -1.2745
143 I A 0.0000
144 G A -0.5588
145 K A -1.7454
146 F A 0.0000
147 D A -0.8810
148 M A 0.0000
149 I A 0.0000
150 W A 0.0000
151 D A 0.0000
152 R A -0.4363
153 G A -0.1999
154 A A 0.0000
155 L A 0.0000
156 V A 0.0000
157 A A 0.0000
158 I A 0.0000
159 N A -0.1660
160 P A -0.1451
161 G A -0.5800
162 D A -0.6858
163 R A 0.0000
164 K A -1.0235
165 C A 0.3358
166 Y A 0.0000
167 A A 0.0000
168 D A -1.5465
169 T A 0.0000
170 M A 0.0000
171 F A 0.3110
172 S A -0.0550
173 L A 0.0000
174 L A 0.0000
175 G A -0.4268
176 K A -2.0297
177 K A -2.0077
178 F A 0.0000
179 Q A -0.1579
180 Y A 0.0000
181 L A 0.0000
182 L A 0.0000
183 C A 0.0000
184 V A 0.0000
185 L A 0.1549
186 S A 0.0092
187 Y A 0.0000
188 D A -0.2714
189 P A 0.0000
190 T A -0.3705
191 K A -1.7309
192 H A -0.4503
193 P A -0.2534
194 G A -0.1424
195 P A -0.0953
196 P A -0.0669
197 F A 0.0000
198 Y A 0.0000
199 V A 0.0000
200 P A 0.0000
201 H A -0.3176
202 A A -0.0413
203 E A -0.3418
204 I A 0.0000
205 E A -1.4553
206 R A -1.4348
207 L A 0.0000
208 F A 0.0000
209 G A -0.5593
210 K A -1.4662
211 I A 1.0791
212 C A 0.0000
213 N A -1.0959
214 I A -0.0828
215 R A -1.7111
216 C A 0.0046
217 L A 0.3830
218 E A -0.4946
219 K A -1.6854
220 V A -0.1637
221 D A -1.6365
222 A A -0.2244
223 F A 0.1680
224 E A -2.0575
225 E A -2.4760
226 R A -2.1878
227 H A -0.7421
228 K A -1.7575
229 S A -0.4761
230 W A 0.1136
231 G A -0.4244
232 I A 0.0000
233 D A -1.7477
234 C A -0.0937
235 L A 0.0000
236 F A 0.2416
237 E A -0.1453
238 K A -0.4596
239 L A 0.0000
240 Y A 0.0000
241 L A 0.0000
242 L A 0.0000
243 T A -0.0730
244 E A -0.6311
245 K A -1.7580
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Laboratory of Theory of Biopolymers 2018