| Chain sequence(s) |
A: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA
C: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA B: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA D: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:03:07)
[INFO] Main: Simulation completed successfully. (00:03:09)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | D | A | -2.9650 | |
| 2 | A | A | -1.7633 | |
| 3 | E | A | -1.4185 | |
| 4 | F | A | 0.5420 | |
| 5 | R | A | -1.6169 | |
| 6 | H | A | -2.1860 | |
| 7 | D | A | -2.5170 | |
| 8 | S | A | -1.4496 | |
| 9 | G | A | -0.8665 | |
| 10 | Y | A | -0.1549 | |
| 11 | E | A | -1.6976 | |
| 12 | V | A | -1.1547 | |
| 13 | H | A | -2.2139 | |
| 14 | H | A | -2.4498 | |
| 15 | Q | A | -2.5348 | |
| 16 | K | A | -2.1850 | |
| 17 | L | A | 0.3335 | |
| 18 | V | A | 1.8493 | |
| 19 | F | A | 3.1582 | |
| 20 | F | A | 1.8140 | |
| 21 | A | A | -0.7265 | |
| 22 | E | A | -3.1451 | |
| 23 | D | A | -3.3241 | |
| 24 | V | A | -1.1605 | |
| 25 | G | A | -1.3907 | |
| 26 | S | A | -1.7692 | |
| 27 | N | A | -2.9405 | |
| 28 | K | A | -3.3756 | |
| 29 | G | A | -1.7413 | |
| 30 | A | A | -0.2396 | |
| 31 | I | A | 0.4699 | |
| 32 | I | A | 0.9502 | |
| 33 | G | A | 1.2477 | |
| 34 | L | A | 1.2340 | |
| 35 | M | A | 0.7544 | |
| 36 | V | A | 0.6464 | |
| 37 | G | A | 0.1975 | |
| 38 | G | A | 0.8665 | |
| 39 | V | A | 2.6670 | |
| 40 | V | A | 2.5054 | |
| 41 | I | A | 3.0211 | |
| 42 | A | A | 1.0166 | |
| 1 | D | B | -3.6288 | |
| 2 | A | B | -2.0873 | |
| 3 | E | B | -1.5137 | |
| 4 | F | B | 0.1917 | |
| 5 | R | B | -1.5201 | |
| 6 | H | B | -1.8772 | |
| 7 | D | B | -2.0571 | |
| 8 | S | B | -1.2755 | |
| 9 | G | B | -0.9055 | |
| 10 | Y | B | -0.4642 | |
| 11 | E | B | -1.4371 | |
| 12 | V | B | -0.8488 | |
| 13 | H | B | -1.6589 | |
| 14 | H | B | -2.1567 | |
| 15 | Q | B | -2.3996 | |
| 16 | K | B | -2.1743 | |
| 17 | L | B | 0.0000 | |
| 18 | V | B | 1.1778 | |
| 19 | F | B | 0.0000 | |
| 20 | F | B | 1.5153 | |
| 21 | A | B | 0.0000 | |
| 22 | E | B | -3.6791 | |
| 23 | D | B | -4.5055 | |
| 24 | V | B | 0.0000 | |
| 25 | G | B | -1.7502 | |
| 26 | S | B | 0.0000 | |
| 27 | N | B | -3.2206 | |
| 28 | K | B | -3.5183 | |
| 29 | G | B | 0.0000 | |
| 30 | A | B | 0.0000 | |
| 31 | I | B | 0.0000 | |
| 32 | I | B | 0.0000 | |
| 33 | G | B | 0.0000 | |
| 34 | L | B | 0.0000 | |
| 35 | M | B | 0.0000 | |
| 36 | V | B | 0.4285 | |
| 37 | G | B | 0.2215 | |
| 38 | G | B | 0.7769 | |
| 39 | V | B | 2.1555 | |
| 40 | V | B | 0.0000 | |
| 41 | I | B | 2.7136 | |
| 42 | A | B | 0.9289 | |
| 1 | D | C | -3.6708 | |
| 2 | A | C | -2.0660 | |
| 3 | E | C | -1.7482 | |
| 4 | F | C | -0.0231 | |
| 5 | R | C | -1.8034 | |
| 6 | H | C | -2.0658 | |
| 7 | D | C | -2.2740 | |
| 8 | S | C | -1.2039 | |
| 9 | G | C | -0.8772 | |
| 10 | Y | C | -0.1239 | |
| 11 | E | C | -0.7946 | |
| 12 | V | C | -0.1374 | |
| 13 | H | C | -1.1913 | |
| 14 | H | C | -1.7876 | |
| 15 | Q | C | -2.3931 | |
| 16 | K | C | -2.4306 | |
| 17 | L | C | 0.0000 | |
| 18 | V | C | 0.7284 | |
| 19 | F | C | 0.0000 | |
| 20 | F | C | 1.2924 | |
| 21 | A | C | 0.0000 | |
| 22 | E | C | -4.2668 | |
| 23 | D | C | -4.9384 | |
| 24 | V | C | 0.0000 | |
| 25 | G | C | -2.0894 | |
| 26 | S | C | 0.0000 | |
| 27 | N | C | -3.3990 | |
| 28 | K | C | -3.4503 | |
| 29 | G | C | 0.0000 | |
| 30 | A | C | 0.0000 | |
| 31 | I | C | 0.0000 | |
| 32 | I | C | 0.0000 | |
| 33 | G | C | 0.0000 | |
| 34 | L | C | 0.0000 | |
| 35 | M | C | 0.0000 | |
| 36 | V | C | 0.4987 | |
| 37 | G | C | 0.2565 | |
| 38 | G | C | 0.9180 | |
| 39 | V | C | 2.1304 | |
| 40 | V | C | 0.0000 | |
| 41 | I | C | 2.4488 | |
| 42 | A | C | 0.7564 | |
| 1 | D | D | -3.0798 | |
| 2 | A | D | -1.7207 | |
| 3 | E | D | -2.0995 | |
| 4 | F | D | -0.1886 | |
| 5 | R | D | -2.5747 | |
| 6 | H | D | -2.6783 | |
| 7 | D | D | -2.9912 | |
| 8 | S | D | -1.4136 | |
| 9 | G | D | -0.6204 | |
| 10 | Y | D | 0.4548 | |
| 11 | E | D | -0.2870 | |
| 12 | V | D | 0.7013 | |
| 13 | H | D | -0.9840 | |
| 14 | H | D | -1.8850 | |
| 15 | Q | D | -2.3370 | |
| 16 | K | D | -2.4410 | |
| 17 | L | D | 0.0000 | |
| 18 | V | D | 1.2481 | |
| 19 | F | D | 2.0327 | |
| 20 | F | D | 2.0383 | |
| 21 | A | D | -0.6890 | |
| 22 | E | D | -3.3675 | |
| 23 | D | D | -4.0045 | |
| 24 | V | D | -2.0622 | |
| 25 | G | D | -1.8577 | |
| 26 | S | D | -1.6882 | |
| 27 | N | D | -3.1692 | |
| 28 | K | D | -3.0933 | |
| 29 | G | D | -1.0601 | |
| 30 | A | D | 0.0366 | |
| 31 | I | D | 0.5987 | |
| 32 | I | D | 0.9419 | |
| 33 | G | D | 1.0179 | |
| 34 | L | D | 1.1647 | |
| 35 | M | D | 1.1630 | |
| 36 | V | D | 0.9885 | |
| 37 | G | D | 0.2479 | |
| 38 | G | D | 0.9440 | |
| 39 | V | D | 2.5828 | |
| 40 | V | D | 2.5430 | |
| 41 | I | D | 2.5571 | |
| 42 | A | D | 1.0305 |