Project name: 1cyv

Status: done

Started: 2025-03-04 14:27:25
Settings
Chain sequence(s) A: MIPGGLSEAKPATPEIQEIVDKVKPQLEEKTNETYGKLEAVQYKTQVVAGTNYYIKVRAGDNKYLHLKVFKSLPGQNEDLVLTGYQVDKNKDDELTGF
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:06)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:06)
Show buried residues

Minimal score value
-3.9923
Maximal score value
2.3681
Average score
-0.7507
Total score value
-73.5732

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 1.3891
2 I A 1.2566
3 P A 1.0113
4 G A 0.0000
5 G A 0.1101
6 L A 0.5137
7 S A -0.3737
8 E A -1.2084
9 A A -0.9518
10 K A -1.6503
11 P A -0.7920
12 A A 0.0000
13 T A 0.0000
14 P A -1.6901
15 E A -2.6857
16 I A 0.0000
17 Q A -2.5654
18 E A -3.2506
19 I A -1.7867
20 V A 0.0000
21 D A -3.5371
22 K A -2.2408
23 V A 0.2816
24 K A 0.0000
25 P A -2.3138
26 Q A -2.5171
27 L A -2.0934
28 E A -3.1228
29 E A -3.8868
30 K A -3.5248
31 T A -2.9699
32 N A -2.9253
33 E A -1.9617
34 T A -0.2879
35 Y A 0.3782
36 G A -0.5340
37 K A -1.4923
38 L A -2.0618
39 E A -1.8231
40 A A 0.0000
41 V A 0.0000
42 Q A 0.0000
43 Y A -0.6549
44 K A -0.7725
45 T A -0.1739
46 Q A 0.2872
47 V A 2.0922
48 V A 2.3681
49 A A 0.8111
50 G A 0.2752
51 T A 1.0846
52 N A 1.1766
53 Y A 0.8810
54 Y A 0.6003
55 I A 0.0000
56 K A 0.0000
57 V A 0.0000
58 R A -1.0608
59 A A 0.0000
60 G A 0.0000
61 D A -2.8730
62 N A -3.3978
63 K A -3.2553
64 Y A -2.2128
65 L A 0.0000
66 H A 0.0000
67 L A 0.0000
68 K A 0.0000
69 V A 1.1320
70 F A 0.0000
71 K A -0.1916
72 S A -0.3079
73 L A -0.9665
74 P A -0.8355
75 G A -1.5965
76 Q A -2.5910
77 N A -3.0161
78 E A -3.2608
79 D A -2.4978
80 L A -0.1934
81 V A 1.1587
82 L A 1.8635
83 T A 1.1179
84 G A 1.1740
85 Y A 1.6373
86 Q A 0.4668
87 V A 0.3491
88 D A 0.0000
89 K A -3.2948
90 N A -3.9923
91 K A -3.4998
92 D A -2.2069
93 D A -2.9416
94 E A -1.5469
95 L A 0.9213
96 T A 0.8951
97 G A 1.1627
98 F A 1.6192
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Laboratory of Theory of Biopolymers 2018