Project name: 5UDC

Status: done

Started: 2026-03-29 08:22:48
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Chain sequence(s) H: QVQLVQSGAEVKKPGSSVMVSCQASGGLLEDYIINWVRQAPGQGPEWMGGIIPVLGTVHYGPKFQGRVTITADESTDTAYMELSSLRSEDTAMYYCATETALVVSETYLPHYFDNWGQGTLVTVSS
L: DIQMTQSPSSLSAAVGDRVTITCQASQDIVNYLNWYQQKPGKAPKLLIYVASNLETGVPSRFSGSGSGTDFSLTISSLQPEDVATYYCQQYDNLPLTFGGGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:10)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:12)
Show buried residues

Minimal score value
-2.8518
Maximal score value
2.7703
Average score
-0.4561
Total score value
-106.2722

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.7189
2 V H 0.0000
3 Q H -1.5633
4 L H 0.0000
5 V H 0.4414
6 Q H 0.0000
7 S H -0.0848
8 G H -0.4523
9 A H 0.1813
11 E H 0.2343
12 V H 1.0428
13 K H -0.7113
14 K H -1.7020
15 P H -1.8768
16 G H -1.4719
17 S H -1.1608
18 S H -0.7177
19 V H 0.0000
20 M H 0.4773
21 V H 0.0000
22 S H 0.1890
23 C H 0.0000
24 Q H -0.3271
25 A H 0.0000
26 S H -0.7872
27 G H -1.2046
28 G H -0.8586
29 L H -0.3900
30 L H 0.0000
35 E H -0.9111
36 D H 0.1248
37 Y H 0.2988
38 I H 0.0000
39 I H 0.0000
40 N H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.5712
45 A H -0.9466
46 P H -1.0442
47 G H -1.2070
48 Q H -1.7308
49 G H -1.0658
50 P H 0.0000
51 E H -0.7868
52 W H 0.0000
53 M H 0.0000
54 G H 0.0000
55 G H 0.0000
56 I H 0.0000
57 I H 0.0000
58 P H -0.1157
59 V H 1.2545
62 L H 0.5105
63 G H 0.2897
64 T H 0.3942
65 V H 0.8995
66 H H 0.4077
67 Y H -0.2487
68 G H 0.0000
69 P H -1.5948
70 K H -2.2385
71 F H 0.0000
72 Q H -2.0274
74 G H -1.4652
75 R H -1.3125
76 V H 0.0000
77 T H -0.2290
78 I H 0.0000
79 T H -0.1332
80 A H -0.8600
81 D H -1.4963
82 E H -2.3266
83 S H -1.2461
84 T H -0.9637
85 D H -1.2818
86 T H 0.0000
87 A H 0.0000
88 Y H 0.2065
89 M H 0.0000
90 E H -0.0616
91 L H 0.0000
92 S H -0.6806
93 S H -1.0441
94 L H 0.0000
95 R H -2.8518
96 S H -2.2265
97 E H -2.5375
98 D H 0.0000
99 T H -0.7318
100 A H 0.0000
101 M H 0.3629
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 T H 0.0000
107 E H 0.0000
108 T H 0.4017
109 A H 0.0000
110 L H 2.2617
111 V H 2.7703
111A V H 1.5995
111B S H -0.1172
111C E H -1.6099
112C T H -0.6432
112B Y H 0.1864
112A L H 0.3284
112 P H 0.0000
113 H H 0.1939
114 Y H 0.3412
115 F H 0.0000
116 D H -0.4998
117 N H -0.9567
118 W H 0.0000
119 G H 0.0000
120 Q H -1.1025
121 G H -0.4259
122 T H 0.0000
123 L H 0.8903
124 V H 0.0000
125 T H -0.0630
126 V H 0.0000
127 S H -0.7115
128 S H -0.6157
1 D L -2.3025
2 I L 0.0000
3 Q L -2.0001
4 M L 0.0000
5 T L -1.1363
6 Q L -0.8077
7 S L -0.7413
8 P L -0.6577
9 S L -0.8959
10 S L -1.1798
11 L L -0.8749
12 S L -1.1092
13 A L 0.0000
14 A L -0.7059
15 V L 0.2919
16 G L -0.5247
17 D L -1.6361
18 R L -2.2922
19 V L 0.0000
20 T L -0.6246
21 I L 0.0000
22 T L -0.7683
23 C L 0.0000
24 Q L -2.2488
25 A L 0.0000
26 S L -1.9087
27 Q L -2.1040
28 D L -2.0681
29 I L 0.0000
36 V L 0.8553
37 N L 0.3316
38 Y L 0.7147
39 L L 0.0000
40 N L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L -0.8265
44 Q L -1.3079
45 K L -1.7654
46 P L -1.1985
47 G L -1.6590
48 K L -2.5303
49 A L -1.5751
50 P L 0.0000
51 K L -1.3120
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.6315
56 V L 0.8932
57 A L 0.0000
65 S L -0.3093
66 N L -0.3775
67 L L 0.0637
68 E L -0.3397
69 T L -0.3704
70 G L -0.4573
71 V L -0.2700
72 P L -0.3423
74 S L -0.4299
75 R L -0.7551
76 F L 0.0000
77 S L -0.4133
78 G L 0.0000
79 S L -0.7505
80 G L -0.8500
83 S L -0.6718
84 G L -0.8980
85 T L -1.8241
86 D L -2.3758
87 F L 0.0000
88 S L -0.7570
89 L L 0.0000
90 T L 0.0000
91 I L 0.0000
92 S L -1.4161
93 S L -1.1761
94 L L 0.0000
95 Q L -0.7657
96 P L -0.9338
97 E L -1.5724
98 D L 0.0000
99 V L -0.4243
100 A L 0.0000
101 T L -1.0946
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 Y L 0.0000
108 D L -0.8034
109 N L -1.1411
114 L L -0.3467
115 P L 0.0000
116 L L 0.0000
117 T L -0.7550
118 F L -0.2550
119 G L 0.0000
120 G L -1.1137
121 G L 0.0000
122 T L 0.0000
123 K L -2.0826
124 V L 0.0000
125 E L -1.5788
126 I L -0.7171
127 K L -1.5032
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Laboratory of Theory of Biopolymers 2018