Project name: rfab2_nb2

Status: done

Started: 2025-07-24 10:31:31
Settings
Chain sequence(s) A: QVQLVESGGGLVQPGGSLRLSCAASGSMDFPFSSYSLGWFRQAPGQGLEAVAAISSDGKYTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAARESEAFNPLDPSRYDYWGQGTLVTVS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:29)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:30)
Show buried residues

Minimal score value
-2.6511
Maximal score value
1.6886
Average score
-0.7363
Total score value
-93.5078

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.4387
2 V A -1.1473
3 Q A -1.2624
4 L A 0.0000
5 V A 1.1450
6 E A 0.0000
7 S A -0.1791
8 G A -0.6998
9 G A 0.1024
10 G A 0.8243
11 L A 1.3995
12 V A 0.0275
13 Q A -1.2115
14 P A -1.4574
15 G A -1.3383
16 G A -1.0815
17 S A -1.3109
18 L A -1.1437
19 R A -2.3505
20 L A 0.0000
21 S A -0.5375
22 C A 0.0000
23 A A -0.1973
24 A A -0.5294
25 S A -0.7928
26 G A -0.9760
27 S A -0.5582
28 M A 0.1589
29 D A -0.9545
30 F A -0.0035
31 P A -0.3896
32 F A -0.7933
33 S A -1.1846
34 S A -1.0789
35 Y A 0.0000
36 S A 0.0000
37 L A 0.0000
38 G A 0.0000
39 W A 0.0000
40 F A 0.0000
41 R A 0.0000
42 Q A -0.8556
43 A A -1.1036
44 P A -1.1370
45 G A -1.3500
46 Q A -1.9003
47 G A -1.3368
48 L A -0.8171
49 E A -1.5625
50 A A -1.1597
51 V A 0.0000
52 A A 0.0000
53 A A 0.0000
54 I A 0.0000
55 S A 0.0000
56 S A -2.0132
57 D A -2.5329
58 G A -1.7583
59 K A -1.9719
60 Y A 0.1084
61 T A 0.2532
62 Y A -0.1942
63 Y A -1.0614
64 A A -1.4793
65 D A -2.3779
66 S A -1.7683
67 V A 0.0000
68 K A -2.5163
69 G A -1.7148
70 R A -1.4090
71 F A 0.0000
72 T A -1.0260
73 I A 0.0000
74 S A -0.7880
75 R A -1.3370
76 D A -1.8590
77 N A -2.0462
78 S A -1.7893
79 K A -2.5290
80 N A -1.9533
81 T A 0.0000
82 L A 0.0000
83 Y A 0.0000
84 L A 0.0000
85 Q A -1.7786
86 M A 0.0000
87 N A -1.4298
88 S A -1.1625
89 L A 0.0000
90 R A -2.1448
91 A A -1.6184
92 E A -2.2107
93 D A 0.0000
94 T A -0.4155
95 A A 0.0000
96 V A 0.7820
97 Y A 0.0000
98 Y A 0.3844
99 C A 0.0000
100 A A 0.0000
101 A A 0.0000
102 R A -2.3386
103 E A -2.6511
104 S A -2.1996
105 E A -1.8272
106 A A 0.0000
107 F A 1.3270
108 N A -0.5305
109 P A -0.9778
110 L A 0.0000
111 D A -2.4987
112 P A -1.6609
113 S A -1.6025
114 R A -2.4680
115 Y A 0.0000
116 D A -2.3523
117 Y A -1.3883
118 W A -0.2431
119 G A -0.0241
120 Q A -0.7886
121 G A 0.0000
122 T A 0.6662
123 L A 1.6886
124 V A 0.0000
125 T A 0.4024
126 V A 0.0000
127 S A -0.5014
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018