Project name: 184

Status: done

Started: 2025-06-25 13:26:16
Settings
Chain sequence(s) H: QVQLQESGGDSVQAGGSLRLSCAASGSTYSSNCMGWFRQAPGKEREEVASMSIRSGRTYYSDSVKGRFTISHDGSKNTLYLQMNSLKAEDTAMYYCAAAYGGSRCDYNYRGQGTQVTVSS
input PDB
Selected Chain(s) H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with H chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:00)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:01)
Show buried residues

Minimal score value
-3.744
Maximal score value
1.3577
Average score
-1.0212
Total score value
-122.5495

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.3640
2 V H -1.1711
3 Q H -1.5532
4 L H 0.0000
5 Q H -2.0006
6 E H -1.4935
7 S H -1.3951
8 G H -1.4593
9 G H -1.6766
11 D H -2.2807
12 S H -1.3091
13 V H -1.0757
14 Q H -1.5566
15 A H -1.5666
16 G H -1.2879
17 G H -1.0281
18 S H -1.0342
19 L H -1.1066
20 R H -1.7836
21 L H 0.0000
22 S H -0.7912
23 C H 0.0000
24 A H -1.0177
25 A H -0.9337
26 S H -1.1067
27 G H -0.7782
28 S H -0.2518
29 T H 0.2846
30 Y H 1.3577
35 S H 0.0000
36 S H 0.0000
37 N H -0.0411
38 C H -0.6201
39 M H 0.0000
40 G H 0.0000
41 W H 0.0000
42 F H -0.7213
43 R H 0.0000
44 Q H -2.0590
45 A H -1.9176
46 P H -1.3701
47 G H -1.9556
48 K H -3.4460
49 E H -3.7440
50 R H -3.0986
51 E H -3.0023
52 E H -1.2713
53 V H 0.0000
54 A H 0.0000
55 S H 0.0000
56 M H 0.0000
57 S H -1.0007
58 I H -1.1048
59 R H -2.1847
62 S H -1.6888
63 G H -1.8434
64 R H -2.0366
65 T H -0.3494
66 Y H 0.5297
67 Y H -0.2491
68 S H -1.2976
69 D H -2.3746
70 S H -1.8354
71 V H 0.0000
72 K H -2.4650
74 G H -1.7588
75 R H -1.6767
76 F H 0.0000
77 T H -0.6319
78 I H 0.0000
79 S H -0.5115
80 H H -0.8419
81 D H -1.4002
82 G H -1.6896
83 S H -1.5431
84 K H -2.3665
85 N H -1.6385
86 T H -1.2603
87 L H 0.0000
88 Y H -0.3875
89 L H 0.0000
90 Q H -0.9694
91 M H 0.0000
92 N H -1.2614
93 S H -1.1711
94 L H 0.0000
95 K H -2.2743
96 A H -1.6880
97 E H -2.2500
98 D H 0.0000
99 T H -1.1216
100 A H 0.0000
101 M H -0.3072
102 Y H 0.0000
103 Y H -0.9138
104 C H 0.0000
105 A H 0.0000
106 A H 0.0000
107 A H 0.0000
108 Y H 0.5857
109 G H -0.7287
110 G H -1.0401
111 S H -1.4232
112 R H -2.3317
113 C H -1.6737
114 D H -2.3005
115 Y H -1.5828
116 N H -1.5241
117 Y H -1.3199
118 R H -2.3455
119 G H 0.0000
120 Q H -2.0103
121 G H -1.2189
122 T H -1.1619
123 Q H -1.1870
124 V H 0.0000
125 T H -1.2106
126 V H 0.0000
127 S H -1.0698
128 S H -0.8163
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018