| Chain sequence(s) |
B: AAAAAAAAAAAAAAAAAAAAAAAAAAAAAKEKAKKEKEEAKKEGLK
input PDB |
| Selected Chain(s) | B |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with B chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:58)
[INFO] Main: Simulation completed successfully. (00:00:59)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | A | B | 0.1439 | |
| 2 | A | B | 0.1697 | |
| 3 | A | B | 0.1848 | |
| 4 | A | B | 0.1974 | |
| 5 | A | B | 0.2153 | |
| 6 | A | B | 0.2116 | |
| 7 | A | B | 0.2132 | |
| 8 | A | B | 0.2142 | |
| 9 | A | B | 0.2091 | |
| 10 | A | B | 0.2158 | |
| 11 | A | B | 0.2078 | |
| 12 | A | B | 0.1898 | |
| 13 | A | B | 0.2050 | |
| 14 | A | B | 0.2264 | |
| 15 | A | B | 0.1995 | |
| 16 | A | B | 0.2114 | |
| 17 | A | B | 0.2202 | |
| 18 | A | B | 0.2285 | |
| 19 | A | B | 0.2285 | |
| 20 | A | B | 0.2320 | |
| 21 | A | B | 0.2375 | |
| 22 | A | B | 0.2430 | |
| 23 | A | B | 0.0633 | |
| 24 | A | B | 0.0437 | |
| 25 | A | B | -0.3456 | |
| 26 | A | B | -0.7480 | |
| 27 | A | B | -1.2066 | |
| 28 | A | B | -1.6089 | |
| 29 | A | B | -2.2935 | |
| 30 | K | B | -3.8159 | |
| 31 | E | B | -4.2994 | |
| 32 | K | B | -4.8787 | |
| 33 | A | B | -4.5540 | |
| 34 | K | B | -5.7451 | |
| 35 | K | B | -6.0000 | |
| 36 | E | B | -6.2605 | |
| 37 | K | B | -6.2147 | |
| 38 | E | B | -5.7193 | |
| 39 | E | B | -5.7630 | |
| 40 | A | B | -4.7164 | |
| 41 | K | B | -4.9219 | |
| 42 | K | B | -4.4443 | |
| 43 | E | B | -4.3211 | |
| 44 | G | B | -2.7791 | |
| 45 | L | B | -1.3671 | |
| 46 | K | B | -2.3451 |