| Chain sequence(s) |
A: GSGHKFF
C: GSGHKFF B: GSGHKFF E: GSGHKFF D: GSGHKFF G: GSGHKFF F: GSGHKFF I: GSGHKFF H: GSGHKFF K: GSGHKFF J: GSGHKFF L: GSGHKFF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:07:43)
[INFO] Main: Simulation completed successfully. (00:07:46)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -0.8275 | |
| 2 | S | A | -1.1874 | |
| 3 | G | A | -0.4641 | |
| 4 | H | A | -0.2667 | |
| 5 | K | A | 0.8960 | |
| 6 | F | A | 2.7397 | |
| 7 | F | A | 3.0916 | |
| 1 | G | B | -1.1410 | |
| 2 | S | B | -1.2263 | |
| 3 | G | B | -0.6273 | |
| 4 | H | B | -0.6364 | |
| 5 | K | B | 0.2434 | |
| 6 | F | B | 0.0000 | |
| 7 | F | B | 2.0654 | |
| 1 | G | C | -0.8788 | |
| 2 | S | C | -1.0062 | |
| 3 | G | C | -1.3250 | |
| 4 | H | C | -1.6430 | |
| 5 | K | C | -0.1744 | |
| 6 | F | C | 1.4724 | |
| 7 | F | C | 0.0000 | |
| 1 | G | D | -0.7599 | |
| 2 | S | D | -0.9291 | |
| 3 | G | D | -0.8852 | |
| 4 | H | D | -0.6595 | |
| 5 | K | D | 0.3385 | |
| 6 | F | D | 2.7373 | |
| 7 | F | D | 1.8215 | |
| 1 | G | E | -0.6876 | |
| 2 | S | E | -0.9564 | |
| 3 | G | E | -0.7963 | |
| 4 | H | E | -0.3503 | |
| 5 | K | E | 0.6570 | |
| 6 | F | E | 0.0000 | |
| 7 | F | E | 3.5154 | |
| 1 | G | F | -0.8216 | |
| 2 | S | F | -1.0378 | |
| 3 | G | F | -1.2618 | |
| 4 | H | F | -1.1544 | |
| 5 | K | F | -0.3298 | |
| 6 | F | F | 1.6031 | |
| 7 | F | F | 2.3420 | |
| 1 | G | G | -0.8584 | |
| 2 | S | G | -1.2115 | |
| 3 | G | G | -0.8901 | |
| 4 | H | G | -1.3558 | |
| 5 | K | G | -1.0716 | |
| 6 | F | G | 0.2750 | |
| 7 | F | G | 1.6097 | |
| 1 | G | H | -1.0404 | |
| 2 | S | H | -1.3721 | |
| 3 | G | H | -1.5029 | |
| 4 | H | H | -1.5129 | |
| 5 | K | H | -0.8970 | |
| 6 | F | H | 1.0978 | |
| 7 | F | H | 2.4893 | |
| 1 | G | I | -0.7188 | |
| 2 | S | I | -0.9796 | |
| 3 | G | I | -0.8582 | |
| 4 | H | I | -0.2668 | |
| 5 | K | I | 0.8655 | |
| 6 | F | I | 2.3763 | |
| 7 | F | I | 3.1488 | |
| 1 | G | J | -0.8030 | |
| 2 | S | J | -1.1648 | |
| 3 | G | J | -0.2095 | |
| 4 | H | J | 0.1526 | |
| 5 | K | J | 1.6238 | |
| 6 | F | J | 2.5878 | |
| 7 | F | J | 3.1099 | |
| 1 | G | K | -0.7458 | |
| 2 | S | K | -0.9391 | |
| 3 | G | K | -1.2191 | |
| 4 | H | K | -0.7012 | |
| 5 | K | K | 0.0888 | |
| 6 | F | K | 1.4880 | |
| 7 | F | K | 3.0430 | |
| 1 | G | L | -0.8276 | |
| 2 | S | L | -1.1956 | |
| 3 | G | L | -1.6228 | |
| 4 | H | L | -1.5193 | |
| 5 | K | L | -1.2609 | |
| 6 | F | L | 0.8139 | |
| 7 | F | L | 2.1777 |