Project name: 9b82839b736e7c

Status: done

Started: 2026-02-12 14:03:49
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Chain sequence(s) A: FGGHKGF
C: FGGHKGF
B: FGGHKGF
E: FGGHKGF
D: FGGHKGF
G: FGGHKGF
F: FGGHKGF
I: FGGHKGF
H: FGGHKGF
K: FGGHKGF
J: FGGHKGF
M: FGGHKGF
L: FGGHKGF
O: FGGHKGF
N: FGGHKGF
Q: FGGHKGF
P: FGGHKGF
S: FGGHKGF
R: FGGHKGF
T: FGGHKGF
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:06:29)
[INFO]       Main:     Simulation completed successfully.                                          (00:06:35)
Show buried residues

Minimal score value
-2.8494
Maximal score value
3.241
Average score
0.4307
Total score value
60.3045

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 F A 2.6112
2 G A 0.9050
3 G A -0.3208
4 H A 0.0000
5 K A -1.0089
6 G A 0.0000
7 F A 1.6060
1 F B 2.7423
2 G B 1.0993
3 G B -0.1167
4 H B 0.0000
5 K B -1.0804
6 G B 0.0000
7 F B 1.7395
1 F C 3.2410
2 G C 1.2170
3 G C -0.2272
4 H C 0.0000
5 K C -1.2634
6 G C 0.0000
7 F C 1.7084
1 F D 2.6157
2 G D 1.0081
3 G D -0.4166
4 H D 0.0000
5 K D -1.6700
6 G D 0.0000
7 F D 1.6742
1 F E 2.4250
2 G E 0.6845
3 G E -0.7490
4 H E 0.0000
5 K E -1.4649
6 G E 0.0000
7 F E 1.8404
1 F F 2.6135
2 G F 0.7473
3 G F -0.9429
4 H F 0.0000
5 K F -1.7218
6 G F 0.0000
7 F F 1.6942
1 F G 2.4225
2 G G 0.4662
3 G G -1.0903
4 H G -2.5327
5 K G -2.2850
6 G G -0.5245
7 F G 1.6482
1 F H 2.5149
2 G H 0.8571
3 G H -0.8184
4 H H -1.8877
5 K H -1.5979
6 G H 0.6317
7 F H 2.3204
1 F I 2.3908
2 G I 0.8089
3 G I -0.5732
4 H I 0.0000
5 K I -1.0480
6 G I 0.0000
7 F I 2.0020
1 F J 2.5315
2 G J 1.0131
3 G J -0.3467
4 H J 0.0000
5 K J -0.7392
6 G J 0.0000
7 F J 2.1814
1 F K 3.0871
2 G K 1.3075
3 G K -0.0855
4 H K 0.0000
5 K K -0.7687
6 G K 0.8461
7 F K 1.8944
1 F L 2.5507
2 G L 1.1155
3 G L -0.1200
4 H L 0.0000
5 K L -0.9450
6 G L 0.7209
7 F L 1.8303
1 F M 2.4529
2 G M 1.0442
3 G M -0.2559
4 H M 0.0000
5 K M -0.9386
6 G M 0.0000
7 F M 1.6797
1 F N 3.1791
2 G N 1.4988
3 G N -0.3504
4 H N 0.0000
5 K N -1.1793
6 G N 0.0000
7 F N 1.7290
1 F O 3.0248
2 G O 1.0687
3 G O -0.6388
4 H O -1.8646
5 K O -1.6737
6 G O 0.3768
7 F O 2.1731
1 F P 1.8723
2 G P 0.6109
3 G P -0.3803
4 H P 0.0000
5 K P -0.9054
6 G P 0.0000
7 F P 1.8327
1 F Q 2.2647
2 G Q 0.8292
3 G Q -0.6774
4 H Q 0.0000
5 K Q -0.8864
6 G Q 1.1263
7 F Q 2.3218
1 F R 2.5265
2 G R 1.1189
3 G R -0.7002
4 H R -1.9226
5 K R -1.2812
6 G R 0.0000
7 F R 2.5025
1 F S 2.4253
2 G S 0.3275
3 G S -1.3137
4 H S -2.8429
5 K S -2.4356
6 G S -0.3910
7 F S 1.9161
1 F T 2.8477
2 G T 0.8049
3 G T -0.9792
4 H T -2.8494
5 K T -1.9245
6 G T 0.0172
7 F T 2.1556
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Laboratory of Theory of Biopolymers 2018