| Chain sequence(s) |
A: FGGHKGF
C: FGGHKGF B: FGGHKGF E: FGGHKGF D: FGGHKGF G: FGGHKGF F: FGGHKGF I: FGGHKGF H: FGGHKGF K: FGGHKGF J: FGGHKGF M: FGGHKGF L: FGGHKGF O: FGGHKGF N: FGGHKGF Q: FGGHKGF P: FGGHKGF S: FGGHKGF R: FGGHKGF T: FGGHKGF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:06:29)
[INFO] Main: Simulation completed successfully. (00:06:35)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 2.6112 | |
| 2 | G | A | 0.9050 | |
| 3 | G | A | -0.3208 | |
| 4 | H | A | 0.0000 | |
| 5 | K | A | -1.0089 | |
| 6 | G | A | 0.0000 | |
| 7 | F | A | 1.6060 | |
| 1 | F | B | 2.7423 | |
| 2 | G | B | 1.0993 | |
| 3 | G | B | -0.1167 | |
| 4 | H | B | 0.0000 | |
| 5 | K | B | -1.0804 | |
| 6 | G | B | 0.0000 | |
| 7 | F | B | 1.7395 | |
| 1 | F | C | 3.2410 | |
| 2 | G | C | 1.2170 | |
| 3 | G | C | -0.2272 | |
| 4 | H | C | 0.0000 | |
| 5 | K | C | -1.2634 | |
| 6 | G | C | 0.0000 | |
| 7 | F | C | 1.7084 | |
| 1 | F | D | 2.6157 | |
| 2 | G | D | 1.0081 | |
| 3 | G | D | -0.4166 | |
| 4 | H | D | 0.0000 | |
| 5 | K | D | -1.6700 | |
| 6 | G | D | 0.0000 | |
| 7 | F | D | 1.6742 | |
| 1 | F | E | 2.4250 | |
| 2 | G | E | 0.6845 | |
| 3 | G | E | -0.7490 | |
| 4 | H | E | 0.0000 | |
| 5 | K | E | -1.4649 | |
| 6 | G | E | 0.0000 | |
| 7 | F | E | 1.8404 | |
| 1 | F | F | 2.6135 | |
| 2 | G | F | 0.7473 | |
| 3 | G | F | -0.9429 | |
| 4 | H | F | 0.0000 | |
| 5 | K | F | -1.7218 | |
| 6 | G | F | 0.0000 | |
| 7 | F | F | 1.6942 | |
| 1 | F | G | 2.4225 | |
| 2 | G | G | 0.4662 | |
| 3 | G | G | -1.0903 | |
| 4 | H | G | -2.5327 | |
| 5 | K | G | -2.2850 | |
| 6 | G | G | -0.5245 | |
| 7 | F | G | 1.6482 | |
| 1 | F | H | 2.5149 | |
| 2 | G | H | 0.8571 | |
| 3 | G | H | -0.8184 | |
| 4 | H | H | -1.8877 | |
| 5 | K | H | -1.5979 | |
| 6 | G | H | 0.6317 | |
| 7 | F | H | 2.3204 | |
| 1 | F | I | 2.3908 | |
| 2 | G | I | 0.8089 | |
| 3 | G | I | -0.5732 | |
| 4 | H | I | 0.0000 | |
| 5 | K | I | -1.0480 | |
| 6 | G | I | 0.0000 | |
| 7 | F | I | 2.0020 | |
| 1 | F | J | 2.5315 | |
| 2 | G | J | 1.0131 | |
| 3 | G | J | -0.3467 | |
| 4 | H | J | 0.0000 | |
| 5 | K | J | -0.7392 | |
| 6 | G | J | 0.0000 | |
| 7 | F | J | 2.1814 | |
| 1 | F | K | 3.0871 | |
| 2 | G | K | 1.3075 | |
| 3 | G | K | -0.0855 | |
| 4 | H | K | 0.0000 | |
| 5 | K | K | -0.7687 | |
| 6 | G | K | 0.8461 | |
| 7 | F | K | 1.8944 | |
| 1 | F | L | 2.5507 | |
| 2 | G | L | 1.1155 | |
| 3 | G | L | -0.1200 | |
| 4 | H | L | 0.0000 | |
| 5 | K | L | -0.9450 | |
| 6 | G | L | 0.7209 | |
| 7 | F | L | 1.8303 | |
| 1 | F | M | 2.4529 | |
| 2 | G | M | 1.0442 | |
| 3 | G | M | -0.2559 | |
| 4 | H | M | 0.0000 | |
| 5 | K | M | -0.9386 | |
| 6 | G | M | 0.0000 | |
| 7 | F | M | 1.6797 | |
| 1 | F | N | 3.1791 | |
| 2 | G | N | 1.4988 | |
| 3 | G | N | -0.3504 | |
| 4 | H | N | 0.0000 | |
| 5 | K | N | -1.1793 | |
| 6 | G | N | 0.0000 | |
| 7 | F | N | 1.7290 | |
| 1 | F | O | 3.0248 | |
| 2 | G | O | 1.0687 | |
| 3 | G | O | -0.6388 | |
| 4 | H | O | -1.8646 | |
| 5 | K | O | -1.6737 | |
| 6 | G | O | 0.3768 | |
| 7 | F | O | 2.1731 | |
| 1 | F | P | 1.8723 | |
| 2 | G | P | 0.6109 | |
| 3 | G | P | -0.3803 | |
| 4 | H | P | 0.0000 | |
| 5 | K | P | -0.9054 | |
| 6 | G | P | 0.0000 | |
| 7 | F | P | 1.8327 | |
| 1 | F | Q | 2.2647 | |
| 2 | G | Q | 0.8292 | |
| 3 | G | Q | -0.6774 | |
| 4 | H | Q | 0.0000 | |
| 5 | K | Q | -0.8864 | |
| 6 | G | Q | 1.1263 | |
| 7 | F | Q | 2.3218 | |
| 1 | F | R | 2.5265 | |
| 2 | G | R | 1.1189 | |
| 3 | G | R | -0.7002 | |
| 4 | H | R | -1.9226 | |
| 5 | K | R | -1.2812 | |
| 6 | G | R | 0.0000 | |
| 7 | F | R | 2.5025 | |
| 1 | F | S | 2.4253 | |
| 2 | G | S | 0.3275 | |
| 3 | G | S | -1.3137 | |
| 4 | H | S | -2.8429 | |
| 5 | K | S | -2.4356 | |
| 6 | G | S | -0.3910 | |
| 7 | F | S | 1.9161 | |
| 1 | F | T | 2.8477 | |
| 2 | G | T | 0.8049 | |
| 3 | G | T | -0.9792 | |
| 4 | H | T | -2.8494 | |
| 5 | K | T | -1.9245 | |
| 6 | G | T | 0.0172 | |
| 7 | F | T | 2.1556 |