Project name: Calcitonin

Status: done

Started: 2025-07-27 21:56:03
Settings
Chain sequence(s) A: CGNLSTCMLGTLTQDFHKFHTFPQTNTGVGTP
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:17)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:18)
Show buried residues

Minimal score value
-0.9187
Maximal score value
2.0565
Average score
0.332
Total score value
10.6246

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 C A 0.7037
2 G A -0.3893
3 N A -0.4543
4 L A 1.3342
5 S A 0.8917
6 T A 0.9594
7 C A 1.3880
8 M A 1.7852
9 L A 2.0565
10 G A 0.9726
11 T A 0.4884
12 L A 0.9889
13 T A 0.3682
14 Q A -0.6636
15 D A -0.1197
16 F A 0.7563
17 H A -0.4345
18 K A 0.0917
19 F A 1.0272
20 H A -0.1274
21 T A 0.1685
22 F A 0.2727
23 P A -0.0595
24 Q A -0.5016
25 T A 0.0000
26 N A -0.9187
27 T A -0.5672
28 G A 0.0523
29 V A 0.7304
30 G A 0.1030
31 T A -0.1009
32 P A -0.1776
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Laboratory of Theory of Biopolymers 2018